Publications

2017 Peer-Reviewed Scientific Journal Articles  Published

  1. Bishop, A., & Eiler, J. (2017). Migration patterns of post-spawning Pacific herring in a subarctic sound. Deep Sea Research Part II: Topical Studies in Oceanography. doi.org/10.1016/j.dsr2.2017.04.016
  2. Hammerschlag, N., Gutosky, L.F.G., Gallagher, A.J., Matich, P., & Cooke, S.J. (2017). Diel habitat use patterns of a marine apex predator (tiger shark, Galeocerdo cuvier) at a high use area exposed to dive tourism. Journal of Experimental Marine Biology and Ecology. doi.org/10.1016/j.jembe.2017.05.010A
  3. Apostle, R. (2017) A Typology for Investigating the Effects of Sturgeon Aquaculture on Conservation Goals. Journal of Culture and Agriculture, 39 (1). doi.org/10.1111/cuag.12077
  4. Simpfendorfer, C., Yeiser, B., Wiley, T., Poulakis, G., Stevens, P., & Heupel. (2011) Environmental Influences on the Spatial Ecology of Juvenile Smalltooth Sawfish (Pristis pectinata): Results from Acoustic Monitoring. PloS One
  5. Oliver, M., Breece, M., Haulsee, D., Cimino, M., Kohut, J., Aragon D., & Fox, D. (2017) Factors affecting detection efficiency of mobile telemetry Slocum gliders. Animal Biotelemetry. doi.org/10.1186/s40317-017-0129-8

2016 Peer-Reviewed Scientific Journal Articles  Published

  1. Apostle, R., & Gazit, T. (2016). Ocean tracking technologies: observing species at risk. Maritime Studies, 15(1), 13. doi.org/10.1186/s40152-016-0052-2
  2. Auger-Méthé, M, C Field, CM Albertsen, AE Derocher, MA Lewis, ID Jonsen, J Mills Flemming. State-space models’ dirty little secrets: even simple linear Gaussian models can have estimation problems.Scientific Reports 6:26677
  3. Auger-Methe, M., Albertsen, C. M., Jonsen, I. D., Derocher, A. E., Lidgard, D. C., Studholme, K. R., … Mills Flemming, J. (2016). Spatiotemporal modelling of marine movement data using Template Model Builder. Marine Ecology Progress Series, Submitted, 237–249. http://doi.org/10.3354/meps12019
  4. Barkley, A.N., Cooke, S.J., Fisk, A.T., Hedges, K., Hussey, N.E. 2016. Capture-Induced Stress in Deep-water Arctic Fish Species. Polar Biology doi:10.1007/s00300-016-1928-8
  5. Bass, A. L., Hinch, S. G., Teffer, A. K., Patterson, D. A., & Miller, K. M. (2017). A survey of microparasites present in adult migrating Chinook salmon (Oncorhynchus tshawytscha) in south-western British Columbia determined by high-throughput quantitative polymerase chain reaction. Journal of Fish Diseases. http://doi.org/10.1111/jfd.12607
  6. Beardsall, J. W., Stokesbury, M. J. W., Logan-Chesney, L. M., & Dadswell, M. J. (2016). Atlantic sturgeon Acipenser oxyrinchus Mitchill, 1815 seasonal marine depth and temperature occupancy and movement in the Bay of Fundy. Journal of Applied Ichthyology, 32(5), 809–819. http://doi.org/10.1111/jai.13175
  7. Béguer-Pon, M., Ohashi, K., Sheng, J., Castonguay, M., Dodson, J.D. (2016) Modeling the migration of the American eel in the Gulf of St. Lawrence. Marine Ecology Progress Series 549, 183-198. https://doi.org/10.3354/meps11706
  8. Belbin, S. & VanderZwaag, D. L. (2016) White Sturgeon in Jeopardy: Gauging the Law and Policy Currents, Journal of International Wildlife Law & Policy, 19:1, 62-99, DOI:10.1080/13880292.2016.1131520
  9. Bett, N. N., Hinch, S. G., & Yun, S.S. (2016). Behavioural responses of Pacific salmon to chemical disturbance cues during the spawning migration. Behavioural Processes, 132, 76–84. http://doi.org/10.1016/j.beproc.2016.10.001
  10. Bett, N.N., Hinch, S.G. 2016. Olfactory navigation during spawning migrations: a review and introduction of the hierarchical navigation hypothesis. Biological Reviews. 91: 728-759. doi: 10.1111/brv.12191
  11. Bett, N.N., Hinch, S.G., Burnett, N.J., Donaldson, M.R., Naman, S.N. 2016. Causes and consequences of straying into small populations of Pacific salmon. Fisheries. In Press.
  12. Bett, N.N., Hinch, S.G., Yun, S.S., Dittman, A.H. 2016. Evidence of olfactory imprinting at an early life stage in pink salmon (Oncorhynchus gorbuscha). Scientific Reports, 6, 36393. doi:10.1038/srep36393.
  13. Bianucci, L., Fennel, K., Chabot, D., Shackell, N., & Lavoie, D. (2016). Ocean biogeochemical models as management tools: a case study for Atlantic wolffish and declining oxygen. ICES Journal of Marine Science: Journal Du Conseil, 73(2), 263–274. http://doi.org/10.1093/icesjms/fsv220
  14. Brennan, C. E., Blanchard, H., & Fennel, K. (2016). Putting Temperature and Oxygen Thresholds of Marine Animals in Context of Environmental Change: A Regional Perspective for the Scotian Shelf and Gulf of St. Lawrence. PloS One, 11(12), e0167411. http://doi.org/10.1371/journal.pone.0167411
  15. Broell, F., Burnelll, C., Taggart CT. (2016). Measuring abnormal movements in free-swimming fish with accelerometers: implications for quantifying tag and parasite load. J. Exp. Biol. 291, 695-705. doi: 10.1242/jeb.133033 http://www.phys.ocean.dal.ca/~taggart/Publications/Broell_etal_2016_JEB.pdf
  16. Broell, F., Taylor, A. D., Litvak, M. K., Bezanson, A., & Taggart, C. T. (2016). Post-tagging behaviour and habitat use in shortnose sturgeon measured with high-frequency accelerometer and PSATs. Animal Biotelemetry, 4(1), 11. http://doi.org/10.1186/s40317-016-0103-x
  17. Brown, T.A., Chrystal, E., Ferguson, S.H., Yurkowski, D.Y., Watt, C., Hussey, N.E. and Belt, S.T. Coupled changes in the sea ice carbon contribution to diet and trophic position of Cumberland Sound beluga whales identified by H-Print and δ15N analysis. Limnology and Oceanography. In revision.
  18. Brown, TM, DCG Muir, SH Ferguson, BG Young, AT Fisk, KJ Reimer, X Wang. 2016. Mercury and cadmium in ringed seals in the Canadian Arctic: influence of location and diet. Science of the Total Environment 545–546: 503–51. doi: 10.1016/j.scitotenv.2015.12.030
  19. Burnett, N., Hinch, S., Bett, N., Braun, D., Casselman, M., Cooke, S., Gelchu, A, Lingard, S., Middleton, C., Minke-Martin, V., White, C. 2016. Reducing carryover effects on the migration and spawning success of sockeye salmon through a management experiment of dam flows. River Research and Applications. Wiley Online Library. DOI: 10.1002/rra.3051
  20. Chang, Y-L, J. Sheng, K. Ohashi, M. Béguer-Pon, Y. Miyazawa, 2016. Impacts of interannual ocean circulation variability on Japanese eel larval migration in the western North Pacific Ocean. Public Library of Science (PLOS). doi:10.1371/journal.pone.0144423.
  21. Chang, Y.-L., Miyazawa, Y., Béguer-Pon, M. (2016) Simulating the Oceanic Migration of Silver Japanese Eels. PLoS ONE 11, e0150187.
  22. Clark, T., Furey, N., Rechisky, E., Gale, M., Jeffries, K., Porter, A., Casselman, M., Lotto, A., Patterson, D., Cooke, S., Farrell, A., Welch, D., Hinch S. 2016. Tracking the migration of wild sockeye salmon smolts to the ocean reveals distinct regions of nocturnal movement and high mortality. Ecological Applications. 26: 959-978. http://onlinelibrary.wiley.com/doi/10.1890/15-0632/full
  23. Cooke, S. J., Brownscombe, J. W., Raby, G. D., Broell, F., Hinch, S. G., Clark, T. D., & Semmens, J. M. (2016). Remote bioenergetics measurements in wild fish: Opportunities and challenges. Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology. http://doi.org/10.1016/j.cbpa.2016.03.022
  24. Cooke, S. J., Wilson, A. D. M., Elvidge, C. K., Lennox, R. J., Jepsen, N., Colotelo, A. H., & Brown, R. S. (2016). Ten practical realities for institutional animal care and use committees when evaluating protocols dealing with fish in the field. Reviews in Fish Biology and Fisheries, 26(1), 123–133. http://doi.org/10.1007/s11160-015-9413-y
  25. Cooke, S.J. 2016.  Unraveling the mystery of marine fish migration.  Book review of Secor’s “Ecology of Marine Fish Migration”. Ecology. 97:1086–1087
  26. Cooke, S.J., E.G. Martins, D.P. Struthers, L.F.G. Gutowsky, M. Power, S.E. Doka, J.M. Dettmers, D.A. Crook, M.C. Lucas, C.M. Holbrook and C.C. Krueger. 2016. A moving target – incorporating knowledge of the spatial ecology of fish into the assessment and management of freshwater fish populations. Environmental Monitoring and Assessment. 188:Article #239. doi: 10.1007/s10661-016-5228-0
  27. Crawford RE. 2016. Occurrence of a gelatinous predator (Cyanea capillata) may affect the distribution of Boreogadus saida, a key Arctic prey fish species. Polar Biol. 39: 1049-1055. doi:10.1007/s00300-015-1779-8
  28. Crossin, G. T., Hatcher, B. G., Denny, S., Whoriskey, K., Orr, M., Penney, A., & Whoriskey, F. G. (2016). Condition-dependent migratory behaviour of endangered Atlantic salmon smolts moving through an inland sea, 4(1). http://doi.org/10.1093/conphys/cow018
  29. Crossin, G.T., Heupel, M., Holbrook, C.M., Hussey, N.E., Lowerre-Barbieri, S., Nguyen, V.M., Raby, G.D. and Cooke, S.J. Acoustic telemetry and fisheries management. Ecological Applications. In revision.
  30. Dadswell, M. J., Wehrell, S. A., Spares, A. D., Mclean, M. F., Beardsall, J. W., Logan-Chesney, L. M., … Stokesbury, M. J. W. (2016). The annual marine feeding aggregation of Atlantic sturgeon Acipenser oxyrinchus in the inner Bay of Fundy: population characteristics and movement. Journal of Fish Biology. http://doi.org/10.1111/jfb.13120
  31. Dever M., Hebert D., Greenan B.J., Sheng J. and Smith P.C. (2016) Hydrography and coastal circulation along the Halifax Line and the connections with the Gulf of St Lawrence. Atmosphere-Ocean, 54:3, 199-217. DOI: 10.1080/07055900.2016.1189397
  32. Donaldson, M.R., Burnett, N.J., Braun, D.C., Suski, C.D., Hinch, S.G., Cooke, S.J., Kerr, J.T. 2016. Taxonomic bias and international biodiversity conservation research. FACETS DOI: 10.1139/facets-2016-0011.
  33. Eliason, E. J., & Farrell, A. P. (2016). Oxygen uptake in Pacific salmon Oncorhynchus spp.: When ecology and physiology meet. Journal of Fish Biology, 88(1), 359–388. http://doi.org/10.1111/jfb.12790
  34. Eliason, E.J., Farrell, A.P. 2016. Oxygen uptake in Pacific salmon: When ecology and physiology meet. Journal of Fish Biology 88: 359-388. doi:10.1111/jfb.12790
  35. Flaten, A. C., Davidsen, J. G., & Thorstad, E. B. (2016). The first months at sea : marine migration and habitat use of sea trout Salmo trutta post-smolts, (1), 1–17. http://doi.org/10.1111/jfb.13065
  36. Freestone, D., Moore, W. & VanderZwaag, D. (2016). American Eel: A Symposium, Welcome Session. Ocean and Coastal Law Journal, 21(1-2), 3-6. DOI: 10.1525/sp.2007.54.1.23.
  37. Furey, N. B., Hinch, S. G., Bass, A. L., Middleton, C. T., Minke-Martin, V., & Lotto, A. G. (2016). Predator swamping reduces predation risk during nocturnal migration of juvenile salmon in a high-mortality landscape. Journal of Animal Ecology, 85(4), 948–959. http://doi.org/10.1111/1365-2656.12528
  38. Furey, N. B., Hinch, S. G., Mesa, M. G., & Beauchamp, D. A. (2016). Piscivorous fish exhibit temperature-influenced binge feeding during an annual prey pulse. The Journal of Animal Ecology, 85(5), 1307–17. http://doi.org/10.1111/1365-2656.12565
  39. Gallagher, A. J., Cooke, S. J., & Hammerschlag, N. (2016). Risk perceptions and conservation ethics among recreational anglers targeting threatened sharks in the subtropical Atlantic. Endangered Species Research, 29(1), 81–93. http://doi.org/10.3354/esr00704
  40. Goulding, A. T., & Farrell, A. P. (2016). Quantification of ventricular β 2 -adrenoceptor density and ligand binding affinity in wild sockeye salmon Oncorhynchus nerka smolts using a novel modification to the tritiated ligand technique. Journal of Fish Biology, 88(5), 2081–2087. http://doi.org/10.1111/jfb.12977
  41. Halfyard, E. A., Webber, D., Del Papa, J., Leadley, T., Kessel, S. T., Colborne, S. F., & Fisk, A. T. (2017). Evaluation of an acoustic telemetry transmitter designed to identify predation events. Methods in Ecology and Evolution. http://doi.org/10.1111/2041-210X.12726
  42. Hussey, N.E., Hedges, K.J., Barkley, A.N., Teble, M.A., Peklova, I., Webber, D.M., Ferguson, S.H., Yurkowski, D.J., Kessel, S.T., Bedard, J.M., Fisk, A.T. 2016. Movements of a deep-water fish: establishing marine fisheries management boundaries in coastal Arctic fisheries. Ecological Applications In press.
  43. Hutchings, J. A., Stephens, T., & VanderZwaag, D. L. (2016). Marine Species at Risk Protection in Australia and Canada: Paper Promises, Paltry Progressions. Ocean Development & International Law, 47(3), 233–254. http://doi.org/10.1080/00908320.2016.1194092
  44. Katavouta, A., & Thompson, K. R. (2016). Downscaling ocean conditions with application to the Gulf of Maine, Scotian Shelf and adjacent deep ocean. Ocean Modelling, 104, 54–72. http://doi.org/10.1016/j.ocemod.2016.05.007
  45. Kavanaugh, M. T., Oliver, M. J., Chavez, F. P., Letelier, R. M., Muller-Karger, F. E., & Doney, S. C. (2016). Seascapes as a new vernacular for pelagic ocean monitoring, management and conservation. ICES Journal of Marine Science: Journal Du Conseil. http://doi.org/10.1093/icesjms/fsw086
  46. Kessel ST, Hussey NE, Crawford RE, Yurkowski DJ, Webber DM, Dick TA, Fisk AT.  First documented large-scale horizontal movements of individual Arctic cod (Boreogadus saida).  Canadian Journal of Fisheries and Aquatic Sciences (In Press)
  47. Kessel, S.T., N.E. Hussey, R. Crawford, C. O’Neill, D.Y. Yurkowski and A.T. Fisk. 2016. Distinct patterns of Arctic cod (Boreogadus saida) presence and absence in a shallow high Arctic embayment, revealed across open-water and ice-covered periods through acoustic telemetry. Polar Bio. 39: 1057-1068. doi:10.1007/s00300-015-1723-y
  48. Keyser, F. M., Broome, J. E., Bradford, R. G., Sanderson, B., Redden, A. M., Bradford, R. G., … Redden, A. M. (2016). Winter presence and temperature-related diel vertical migration of striped bass (Morone saxatilis) in an extreme high-flow passage in the inner Bay of Fundy. Canadian Journal of Fisheries and Aquatic Sciences, 1–10. http://doi.org/10.1139/cjfas-2016-0002
  49. Lennox R.J., G. Blouin-Demers, A.M. Rous, and S.J. Cooke. 2016. Tracking invasive animals with electronic tags to assess risks and develop management strategies. Biological Invasions. 18:1219–1233. doi:10.1007/s10530-016-1071-z
  50. Lennox R.J., J.M. Chapman, C.M. Souliere, C. Tudorache, M. Wikelski, J.D. Metcalfe, and S.J. Cooke.  2016. Conservation physiology of animal migration. Conservation Physiology. 4: 10.1093/consphys/cov072.
  51. Lennox, R. J., Cooke, S. J., Diserud, O. H., Havn, T. B., Johansen, M. R., Thorstad, E. B., … Uglem, I. (2016). Use of simulation approaches to evaluate the consequences of catch-and-release angling on the migration behaviour of adult Atlantic salmon (Salmo salar). Ecological Modelling, 333, 43–50. http://doi.org/10.1016/j.ecolmodel.2016.04.010
  52. Maggs, J. Q., & Cowley, P. D. (2016). Nine decades of fish movement research in southern Africa: a synthesis of research and findings from 1928 to 2014. Reviews in Fish Biology and Fisheries, 26(3), 287–302. http://doi.org/10.1007/s11160-016-9425-2
  53. Marcoux, M., Ferguson, S. H., Roy, N., Bedard, J. M., & Simard, Y. (2016). Seasonal marine mammal occurrence detected from passive acoustic monitoring in Scott Inlet, Nunavut, Canada. Polar Biology. http://doi.org/10.1007/s00300-016-2040-9
  54. Matthews, C. J. D., Longstaffe, F. J., & Ferguson, S. H. (2016). Dentine oxygen isotopes ( δ18 O) as a proxy for odontocete distributions and movements. Ecology and Evolution, 6(14), 4643–4653. http://doi.org/10.1002/ece3.2238
  55. McLean, M. F., Hanson, K. C., Cooke, S. J., Hinch, S. G., Patterson, D. A., Nettles, T. L., … Crossin, G. T. (2016). Physiological stress response, reflex impairment and delayed mortality of white sturgeon Acipenser transmontanus exposed to simulated fisheries stressors. Conservation Physiology, 4(1), cow031. http://doi.org/10.1093/conphys/cow031
  56. Nguyen, V.M., N. Young, and S.J. Cooke. 2016. A roadmap for knowledge exchange and mobilization research in conservation and natural resource management. Conservation Biology. 10.1111/cobi.12857
  57. Nguyen, V.M., Young, N., Hinch, S.G., Cooke, S.J. 2016. Getting past the blame game: convergence and divergence in perceived threats to salmon resources among anglers and indigenous fishers in Canada’s lower Fraser River. AMBIO. 10.1007/s13280-016-0769-6
  58. Nguyen, Vivian M., Abigail J. Lynch, Nathan Young, Ian G. Coux, Douglas Beard Jr., William W. Taylor, Steven J. Cooke. (2016) “To manage inland fisheries is to manage at the social-ecological watershed scale” Journal of Environmental Management. 181: 312-325. Doi: 10.1016/j.jenvman.2016.06.045
  59. Nguyen, Vivian M., Jill Brooks, Nathan Young, Robert J. Lennox, Neal Haddaway, Frederick G. Whoriskey, Robert Harcourt, and Steven J. Cooke. “To Share or Not to Share in the Emerging Era of Big Data: Perspectives from Fish Telemetry Researchers on Data Sharing.” Canadian Journal of Fisheries and Aquatic Sciences, January 13, 2017. doi:10.1139/cjfas-2016-0261.
  60. Ohashi, K., and J. Sheng, 2016. Investigating the effect of the physical environment and swimming behaviours on the movement of particles in the Gulf of St. Lawrence using an individual-based numerical model. Atmosphere-Ocean, 54, 278-298,  doi: 10.1080/07055900.2015.1090390.
  61. Patterson, D. A., Cooke, S. J., Hinch, S. G., Robinson, K. A., Young, N., Farrell, A. P., & Miller, K. M. (2016). A perspective on physiological studies supporting the provision of scientific advice for the management of Fraser River sockeye salmon (Oncorhynchus nerka), 4(1), 1–15. http://doi.org/10.1093/conphys/cow026
  62. Pleskach K, W Hoang, M. Chu, T Halldorson, L Loseto, SH Ferguson, G Tomy. 2016. Use of mass spectrometry to measure aspartic acid racemization for ageing beluga whales. Polar Biolog, 32 (4), 1370-1380. DOI: 10.1111/mms.12347
  63. Puryear WB, Keogh M, Hill N, Moxley J, Josephson E, Davis KR, Bandoro C, Lidgard D, Bogomolni A, Levin M, Lang S, Hammill M, Bowen D, Johnston DW, Romano T, Waring G, Runstadler J (2016) Prevalence of influenza A virus in live-captured North Atlantic gray seals: a possible wild reservoir. Emerg Microbes Infect, 5(8), 5:e81. DOI: 10.1038/emi.2016.77
  64. Raby, G. D., Casselman, M. T., Cooke, S. J., Hinch, S. G., Farrell, A. P., & Clark, T. D. (2016). Aerobic scope increases throughout an ecologically relevant temperature range in coho salmon. The Journal of Experimental Biology, 219(Pt 12), 1922–31. http://doi.org/10.1242/jeb.137166
  65. Shan, S., J. Sheng, OK. Ohashi, and M. Dever, 2016. Assessing the performance of a multi-nested ocean circulation model using satellite remote sensing and in-situ observations. Satellite Oceanography and Meteorology, 1, 39-59. doi: 10.18063/SOM.2016.01.004.
  66. Sheng, J., and D. Lefairvre, 2016. Introduction to the special issue on dynamics of the Gulf of St. Lawrence system and its influence on the ecosystem: past, present and future. Atmosphere-Ocean, 54, 193-198, doi: 10.1080/07055900.2016.1189397.
  67. Sopinka, N. M., Middleton, C. T., Patterson, D. A., & Hinch, S. G. (2016). Does maternal captivity of wild, migratory sockeye salmon influence offspring performance? Hydrobiologia, 779(1), 1–10. http://doi.org/10.1007/s10750-016-2763-1
  68. Sopinka, N., Hinch, S., Healy, S., Raby, G., Patterson, D. 2016. Effects of experimentally elevated egg cortisol on offspring traits in two species of wild Pacific salmon. Environmental Biology of Fishes 99:717-728. doi:10.1007/s10641-016-0513-x
  69. Sopinka, N., Jeffrey, J., Burnett, N., Patterson, D., Gilmour, K., Hinch, S. 2016. Maternal programming of offspring hypothalamic–pituitary–interrenal axis in wild sockeye salmon (Oncorhynchus nerka). General and Comparative Endocrinology. 242: 30-37. http://dx.doi.org/10.1016/j.ygcen.2015.12.018
  70. Stokesbury, M. J. W., Logan-Chesney, L. M., McLean, M. F., Buhariwalla, C. F., Redden, A. M., Beardsall, J. W., … Dadswell, M. J. (2016). Atlantic Sturgeon Spatial and Temporal Distribution in Minas Passage, Nova Scotia, Canada, a Region of Future Tidal Energy Extraction. PLOS ONE, 11(7), e0158387. http://doi.org/10.1371/journal.pone.0158387
  71. Taylor, A. D., Ohashi, K., Sheng, J., & Litvak, M. K. (2016). Oceanic Distribution, Behaviour, and a Winter Aggregation Area of Adult Atlantic Sturgeon, Acipenser oxyrinchus oxyrinchus, in the Bay of Fundy, Canada. PLOS ONE, 11(4), e0152470. http://doi.org/10.1371/journal.pone.0152470
  72. Taylor, J. J., Sopinka, N. M., Wilson, S. M., Hinch, S. G., Patterson, D. A., Cooke, S. J., & Willmore, W. G. (2016). Examining the relationships between egg cortisol and oxidative stress in developing wild sockeye salmon (Oncorhynchus nerka). Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology. http://doi.org/10.1016/j.cbpa.2016.06.012
  73. Trana, MR, JD Roth, GT Tomy, WG Anderson, SH Ferguson. Increased blubber cortisol in ice-entrapped beluga whales (Delphinapterusleucas). Pol Biol. In press. DOI 10.1007/s00300-015-1881-y
  74. Turk, D., Bedard, J. M., Burt, W. J., Vagle, S., Thomas, H., Azetsu-Scott, K., … Wallace, D. W. R. (2016). Inorganic carbon in a high latitude estuary-fjord system in Canada’s eastern Arctic. Estuarine, Coastal and Shelf Science, 178, 137–147. http://doi.org/10.1016/j.ecss.2016.06.006
  75. Urrego-Blanco, J., J. Sheng, Fred Dupont, 2016. Assessing the performance of one-way and two-way nesting techniques for the shelf circulation modelling system of the eastern Canadian shelf. Atmosphere-Ocean, 54, 75-92, doi:10.1080/07055900.2015.1130122.
  76. Wang, P., and J. Sheng, 2016. A comparative study of wave-current interactions over the eastern Canadian shelf under severe weather conditions.  Journal of Geophysical Research-Oceans, 121, 5252-5281, doi: 10.1002/ 2016JC01175.
  77. Watt, C.A., Orr, J.R., and Ferguson, S.H.  2016. A shift in foraging behaviour of beluga whales (Delphinapterus leucas) from the threatened Cumberland Sound population may reflect a changing Arctic food web. Endangered Species Research, 31: 259-270. https://doi.org/10.3354/esr00768
  78. Watt, C.A., Orr, J.R., and Ferguson, S.H.  2016. Critical foraging habitats for the Canadian narwhal (Monodon monoceros) populations inferred from dive behaviour. Canadian Journal of Zoology.  CJZ-2015-0231 In press.
  79. Whitney, J.E., Al-Chokhachy, R., Bunnell, D.B., Caldwell, C.A., Cooke, S.J., Eliason, E.J., Rogers, M., Lynch, A.J., Paukert C.P. 2016. Physiological basis of climate change impacts on North American Inland Fishes. Fisheries 41: 332-345
  80. Whoriskey, F., & Hindell, M. (2016). Developments in Tagging Technology and Their Contributions to the Protection of Marine Species at Risk. Ocean Development & International Law, 47(3), 221–232. http://doi.org/10.1080/00908320.2016.1194090
  81. Whoriskey, K., Auger-Méthé, M., Albertsen, C. M., Whoriskey, F. G., Binder, T. R., Krueger, C. C., & Flemming, J. M. (2016). A Hidden Markov Movement Model for rapidly identifying behavioral states from animal tracks, 30. Quantitative Methods. Retrieved from http://arxiv.org/abs/1612.06921
  82. Young, N., Corriveau, M., Nguyen, V. M., Cooke, S. J., & Hinch, S. G. (2016). How do potential knowledge users evaluate new claims about a contested resource? Problems of power and politics in knowledge exchange and mobilization. Journal of Environmental Management, 184, 380–388. http://doi.org/10.1016/j.jenvman.2016.10.006
  83. Young, N., Nguyen, V. M., Corriveau, M., Cooke, S. J., & Hinch, S. G. (2016). Knowledge users’ perspectives and advice on how to improve knowledge exchange and mobilization in the case of a co-managed fishery. Environmental Science & Policy, 66, 170–178. http://doi.org/10.1016/j.envsci.2016.09.002
  84. Yurkowski D.J., S.H. Ferguson, C.A.D. Semeniuk, T.M. Brown, D.C.G. Muir & A.T. Fisk (2016). Spatial and temporal variation of an ice-adapted predator’s feeding ecology in a changing Arctic marine ecosystem. Oecologia, 180(3), 631-644. doi:10.1007/s00442-015-3384-5
  85. Yurkowski, D; Semeniuk, C; Harwood, L; Rosing-Asvid, A; Dietz, R; Brown, T; Clackett, S; Grgicak-Mannion, A; Fisk, A; Ferguson, S. 2016. The influence of sea ice phenology on the movement ecology of ringed seals across their latitudinal range. Mar Ecol Prog Ser, 562:237-250. DOI: 10.3354/meps11950
  86. Yurkowski, D.J., A.J. Hussey, N.E. Hussey and A.T. Fisk. Effects of decomposition on carbon and nitrogen stable isotope values of muscle tissue of varying lipid content from three aquatic vertebrate species. Rapid Communications in Mass Spectrometry, 31(4), 389-395.  DOI: 10.1002/rcm.7802
  87. Yurkowski, D.J., S.H. Ferguson, E. S. Choy, L.L. Loseto, T.M. Brown, D.C.G. Muir, C.A.D. Semeniuk and A.T. Fisk. 2016. Latitudinal variation in ecological opportunity and intra-specific competition indicates differences in niche variability and diet specialization of Arctic marine predators. Ecol. & Evol. 6(6): 1666-1678. doi: 10.1002/ece3.1980

2015 Peer-Reviewed Scientific Journal Articles  Published

  1. Abecasis, D., Afonso, P., & Erzini, K. (2015). Towards adaptive management of coastal MPAs: The influence of different conservation targets and costs on the design of no-take areas. Ecological Informatics. http://doi.org/10.1016/j.ecoinf.2015.08.009
  2. Albertsen C.M., K. Whoriskey, D.J. Yurkowski, A. Nielsen & J. Mills-Flemming. Fast-fitting of robust state-space models to animal movement data via Template Model Builder. Ecology (In Press).
  3. Auger-Méthé, M., Field, C., Albertsen, C. M., Derocher, A. E., Lewis, M. a., Jonsen, I. D., & Flemming, J. M. (2015). State-space models’ dirty little secrets: even simple linear Gaussian models can have estimation problems, 1–54. Retrieved from http://arxiv.org/abs/1508.04325
  4. Baker, L. L., Mills Flemming, J. E., Jonsen, I. D., Lidgard, D. C., Iverson, S. J., & Bowen, W. D. (2015). A novel approach to quantifying the spatiotemporal behavior of instrumented grey seals used to sample the environment. Movement Ecology, 3(20), 1–9. http://doi.org/10.1186/s40462-015-0047-4
  5. Bedard, J. M., Vagle, S., Klymak, J. M., Williams, W. J., Curry, B., & Lee, C. M. (2015). Journal of Geophysical Research : Oceans, 120(7): 5000-5018. http://doi.org/10.1002/2015JC010811.Received
  6. Béguer-Pon, M., Shan, S., Thompson, K. R., Castonguay, M., Sheng, J., & Dodson, J. J. (2015). Exploring the role of the physical marine environment in silver eel migrations using a biophysical particle tracking model. ICES Journal of Marine Science: Journal Du Conseil. http://doi.org/10.1093/icesjms/fsv169
  7. Béguer-Pon, M., Castonguay, M., Shan, S., Benchetrit, J., & Dodson, J. J. (2015). Direct observations of American eels migrating across the continental shelf to the Sargasso Sea. Nature Communications, 1–9. http://doi.org/10.1038/ncomms9705
  8. Benchetrit, J., Béguer-Pon, M., Sirois, P., Castonguay, M., Fitzsimons, J., & Dodson, J. J. (2015). Using otolith microchemistry to reconstruct habitat use of American eels Anguilla rostrata in the St. Lawrence River–Lake Ontario system. Ecology of Freshwater Fish. http://doi.org/10.1111/eff.12246
  9. Bennett, R. H., Cowley, P. D., Childs, A.-R., & Næsje, T. F. (2015). Movements and residency of juvenile white steenbras Lithognathus lithognathus in a range of contrasting estuaries. Estuarine, Coastal and Shelf Science, 152, 100–108. http://doi.org/10.1016/j.ecss.2014.11.015
  10. Bett, N. N., & Hinch, S. G. (2015). Attraction of migrating adult sockeye salmon to conspecifics in the absence of natal chemical cues. Behavioral Ecology, 00, 1–8. http://doi.org/10.1093/beheco/arv062
  11. Buhariwalla, C. F., MacMillan, J. L., Gregoire, M., M. J. Dadswell and M.J.W. Stokesbury, In Press. Population Characteristics of Striped Bass killed by cold shock during winter shutdown of a power plant in Nova Scotia. Northeastern Naturalist. Accepted 29 October 2015.
  12. Clark, TD, NB Furey, EL Rechisky, MK Gale, KM Jeffries, AD Porter, MT Casselman, AG Lotto, DA Patterson, SJ Cooke, AP Farrell, DW Welch, and SG Hinch. 2015. Tracking the migration of wild sockeye salmon smolts to the ocean reveals distinct regions of nocturnal movement and high mortality. Ecological Applications. In press.
  13. Capello, M., Robert, M., Soria, M., Potin, G., Itano, D., Holland, K., … Dagorn, L. (2015). A Methodological Framework to Estimate the Site Fidelity of Tagged Animals Using Passive Acoustic Telemetry. Plos One, 10(8), e0134002. http://doi.org/10.1371/journal.pone.0134002
  14. Cook, K. V, Lennox, R. J., Hinch, S. G., & Cooke, S. J. (2015). FISH Out of WATER: How Much Air is Too Much? Fisheries, 40(9), 452–461. http://doi.org/10.1080/03632415.2015.1074570
  15. Cosandey-Godin, A., Krainski, E., Worm, B. & Mills Flemming, J. (2015) Applying Bayesian spatio-temporal models to fisheries bycatch in the Canadian Arctic. Canadian Journal of Fisheries and Aquatic Sciences, 72: 1–12 (2015) dx.doi.org/10.1139/cjfas-2014-0159.
  16. Crawford, R. E. (2015). Occurrence of a gelatinous predator (Cyanea capillata) may affect the distribution of Boreogadus saida, a key Arctic prey fish species. Polar Biology, 1–7. http://doi.org/10.1007/s00300-015-1779-8
  17. Currey, L. M., Heupel, M. R., Simpfendorfer, C. a., & Williams, A. J. (2015). Assessing environmental correlates of fish movement on a coral reef. Coral Reefs. http://doi.org/10.1007/s00338-015-1318-7
  18. Drenner, S. M., Hinch, S. G., Martins, E. G., Furey, N. B., Clark, T. D., Cooke, S. J., … Thomson, R. E. (2015). Environmental conditions and physiological state influence estuarine movements of homing sockeye salmon. Fisheries Oceanography, 24(4), 307–324. http://doi.org/10.1111/fog.12110
  19. Dunlop, S. W., Mann, B. Q., Cowley, P. D., Murray, T. S., & Maggs, J. Q. (2015). Movement patterns of Lichia amia (Teleostei: Carangidae): results from a long-term cooperative tagging project in South Africa. African Zoology, 1–9. http://doi.org/10.1080/15627020.2015.1058724
  20. Escalle, L., Speed, C. W., Meekan, M. G., White, W. T., Babcock, R. C., Pillans, R. D., & Huveneers, C. (2015). Restricted movements and mangrove dependency of the nervous shark Carcharhinus cautus in nearshore coastal waters. Journal of Fish Biology, 87, 323–341. http://doi.org/10.1111/jfb.12724
  21. Eliason, E. J., & Farrell, A. P. (2016). Oxygen uptake in Pacific salmon Oncorhynchus spp.: When ecology and physiology meet. Journal of Fish Biology, 88(1), 359–388. http://doi.org/10.1111/jfb.12790
  22. Espinoza, M., Heupel, M. R., Tobin, A. J., & Simpfendorfer, C. (2015). Movement patterns of silvertip sharks (Carcharhinus albimarginatus) on coral reefs. Coral Reefs, (3). http://doi.org/10.1007/s00338-015-1312-0
  23. Furey, NB, SG Hinch, AG Lotto, and DA Beauchamp. 2015. Extensive feeding on sockeye salmon Oncorhynchus nerka smolts by bull trout Salvelinus confluentus during initial outmigration into a small, unregulated, and inland British Columbia river. Journal of Fish Biology 86(1):392-401.
  24. Furey, NB, SP Vincent, SG Hinch, and DW Welch. 2015. Variability in migration routes influences early marine survival of juvenile salmon smolts. PLoS ONE 10(10): e0139269.
  25. Gibson, A. J., F., Halfyard, E. A., Bradford, R. G., Stokesbury, M. J. W., and A. R. Redden. 2015. Effects of predation on telemetry-based survival estimates: insights from a study on endangered Atlantic salmon smolts. Canadian Journal of Fisheries and Aquatic Sciences, Accepted 14 December 2014.
  26. Havn, T. B., Uglem, I., Solem, Ø., Cooke, S. J., Whoriskey, F. G., & Thorstad, E. B. (2015). The effect of catch-and-release angling at high water temperatures on behaviour and survival of Atlantic salmon Salmo salar during spawning migration. Journal of Fish Biology, 87(2), 342–359. http://doi.org/10.1111/jfb.12722
  27. Holbrook, C. M., Bergstedt, R., Adams, N. S., Hatton, T. W., & McLaughlin, R. L. (2015). Fine-Scale Pathways Used By Adult Sea Lampreys during Riverine Spawning Migrations. Transactions of the American Fisheries Society, 144(3), 549–562. http://doi.org/10.1080/00028487.2015.1017657
  28. Hussey, N. E., Kessel, S. T., Aarestrup, K., Cooke, S. J., Cowley, P. D., Fisk, A. T., … Whoriskey, F. G. (2015). Aquatic animal telemetry: A panoramic window into the underwater world. Science,348 (6240). http://doi.org/10.1126/science.1255642
  29. Hussey, N. E., MacNeil, M. A., Siple, M. C., Popp, B. N., Dudley, S. F. J., & Fisk, A. T. (2015). Expanded trophic complexity among large sharks. Food Webs, 4: 1-7. http://doi.org/10.1016/j.fooweb.2015.04.002
  30. Kessel, S. T., & Hussey, N. E. (2015). Tonic immobility as an anaesthetic for elasmobranchs during surgical implantation procedures. Canadian Journal of Fisheries and Aquatic Sciences, 1–5. http://doi.org/10.1139/cjfas-2015-0136
  31. Kessel, S. T., Hussey, N. E., Crawford, R. E., Yurkowski, D. J., O’Neill, C. V, & Fisk, A. T. (2015). Distinct patterns of Arctic cod (Boreogadus saida) presence and absence in a shallow high Arctic embayment, revealed across open-water and ice-covered periods through acoustic telemetry. Polar Biology, 1–12. http://doi.org/10.1007/s00300-015-1723-y
  32. Kessel, S. T., Hussey, N. E., Webber, D. M., Gruber, S. H., Young, J. M., Smale, M. J., & Fisk, A. T. (2015). Close proximity detection interference with acoustic telemetry: the importance of considering tag power output in low ambient noise environments. Animal Biotelemetry, 3(1), 1–14. http://doi.org/10.1186/s40317-015-0023-1
  33. Lennox, R., K. Whoriskey, G. Crossin, and S. J. Cooke (2015) Influence of angler hook-set behaviour relative to hook type on capture success and incidences of deep hooking and injury in a teleost fish. Fisheries Research 164:201-205.
  34. Matley, J. K., Fisk, A. T., & Dick, T. A. (2015). Foraging ecology of ringed seals (Pusa hispida), beluga whales (Delphinapterus leucas ) and narwhals (Monodon monoceros) in the Canadian High Arctic determined by stomach content and stable isotope analysis. Polar Ecology, 34, 24295. Retrieved from http://dx.doi.org/10.3402/polar.v34.24295
  35. McAllister, J. D., Barnett, A., Lyle, J. M., and Semmens, J. M. (2015) Examining the functional role of current area closures used for the conservation of an overexploited and highly mobile fishery species. ICES Journal of Marine Science. doi: 10.1093/icesjms/
  36. McKinney, M. A., Dean, K., Hussey, N. E., Cliff, G., Wintner, S. P., Dudley, S. F. J., … Fisk, A. T. (2015). Global versus local causes and health implications of high mercury concentrations in sharks from the east coast of South Africa. The Science of the Total Environment, 541, 176–183. http://doi.org/10.1016/j.scitotenv.2015.09.074
  37. Meeuwig, J. J., Harcourt, R. G., & Whoriskey, F. G. (2015). When Science Places Threatened Species at Risk. Conservation Letters, 8(3), 151–152. http://doi.org/10.1111/conl.12185
  38. Murchie, K. J., Shultz, A. D., Stein, J. A., Cooke, S. J., Lewis, J., Franklin, J., … Philipp, D. P. (2015). Defining adult bonefish (Albula vulpes) movement corridors around Grand Bahama in the Bahamian Archipelago. Environmental Biology of Fishes. http://doi.org/10.1007/s10641-015-0422-4
  39. Nowell, L., Brownscombe, J., Gutowsky, L. G., Murchie, K., Suski, C., Danylchuk, A., … Cooke, S. (2015). Swimming energetics and thermal ecology of adult bonefish (Albula vulpes): a combined laboratory and field study in Eleuthera, The Bahamas. Environmental Biology of Fishes, 1–14. http://doi.org/10.1007/s10641-015-0420-6
  40. Ohashi, K., & Sheng, J. (2015). Investigating the Effect of Oceanographic Conditions and Swimming Behaviours on the Movement of Particles in the Gulf of St. Lawrence Using an Individual-Based Numerical Model. Atmosphere-Ocean, 5900(October), 1–21. http://doi.org/10.1080/07055900.2015.1090390
  41. Raby, G.D., M.R. Donaldson, S.G. Hinch, T.D. Clark, E.J. Eliason, K.M. Jeffries, K.V. Cook, A. Teffer, A.L. Bass, K.M. Miller, D.A. Patterson, A.P. Farrell, and S.J. Cooke. 2015. Fishing for effective conservation: context and biotic variation are keys to understanding the survival of Pacific salmon after catch-and-release. Integrative and Comparative Biology 55:554-576
  42. Raby, G.D., S.G. Hinch, D.A. Patterson, J.A. Hills, L.A. Thompson, and S.J. Cooke. 2015. Mechanisms to explain purse seine bycatch mortality of coho salmon. Ecological Applications 25:1757-1775. http://www.esajournals.org/doi/abs/10.1890/14-0798.1
  43. Raby, G.D., S.M. Wilson, D.A. Patterson, S.G. Hinch, T.D. Clark, A.P. Farrell, and S.J. Cooke. 2015. A physiological comparison of three techniques for reviving sockeye salmon exposed to a severe capture stressor during upriver migration. Conservation Physiology doi:10.1093/conphys/cov015.
  44. Raby, G.D., T.D. Clark, A.P. Farrell, D.A. Patterson, N.N. Bett, S.M. Wilson, W.G. Willmore, C.D. Suski, S.G. Hinch, and S.J. Cooke. 2015. Facing the river gauntlet: understanding the effects of fisheries capture and water temperature on the physiology of coho salmon. PLoS ONE 10(4): e0124023. doi:10.1371/journal.pone.0124023
  45. Robinson, K.A., Hinch, S.G., Raby, G.D., Donaldson, M.R., Robichaud, D., Patterson, D.A., and Cooke, S.J. 2015. Influence of post-capture ventilation assistance on migration success of adult sockeye salmon following capture and release. Transactions of the American Fisheries Society 144:693-704.
  46. Rous, A. M., Forrest, A., McKittrick, E. H., Letterio, G., Roszell, J., Wright, T., & Cooke, S. J. (2015). Orientation and Position of Fish Affects Recovery Time from Electrosedation. Transactions of the American Fisheries Society, 144(4), 820–828. http://doi.org/10.1080/00028487.2015.1042555
  47. Sopinka, N., Hinch, S., Healy, S., Harrison, P., Patterson, D. 2015. Egg cortisol treatment affects the behavioural response of coho salmon to a conspecific intruder and threat of predation. Animal Behaviour. 104: 115-122. *Article was chosen by the Editors as a Featured Article (Mother Courage, Animal Behaviour 104: iii-iv).
  48. Sopinka, N. (2015). Listening to Fishes to See Where They Go. Fisheries, 40(10). http://doi.org/10.1080/03632415.2015.1082473
  49. Spares, A. D., Stokesbury, M. J. W., Dadswell, M. J., O’Dor, R. K., & Dick, T. A. (2015). Residency and movement patterns of Arctic charr Salvelinus alpinus relative to major estuaries. Journal of Fish Biology. Retrieved from http://doi.org/10.1111/jfb.12683
  50. Spares, A., Dadswell, M., Dickinson, M., & Stokesbury, M. W. (2015). A critical review of marine adaptability within the anadromous Salmoninae. Reviews in Fish Biology and Fisheries, 25(3), 503–519. http://doi.org/10.1007/s11160-015-9392-z
  51. Speed, C. W., Meekan, M. G., Field, I. C., McMahon, C. R., Harcourt, R. G., Stevens, J. D., … Bradshaw, C. J. a. (2015). Reef shark movements relative to a coastal marine protected area. Regional Studies in Marine Science. Retrieved from http://doi.org/10.1016/j.rsma.2015.05.002
  52. Stehfest, K. M., Lyle, J. M., & Semmens, J. M. (2015). The use of acoustic accelerometer tags to determine seasonal changes in activity and catchability of a recreationally caught marine teleost. ICES Journal of Marine Science: Journal Du Conseil. http://doi.org/10.1093/icesjms/fsv115
  53. Stewart, N. D., Dadswell, M. J., Leblanc, P., Bradford, R. G., Ceapa, C. and M. J. W. Stokesbury. 2015. Age and growth of Atlantic sturgeon from the Saint John River, New Brunswick, Canada. The North American Journal of Fisheries Management, 35:364-371.
  54. Taylor, A. D., & Litvak, M. K. (2015). Quantifying a Manual Triangulation Technique for Aquatic Ultrasonic Telemetry. North American Journal of Fisheries Management, 35(5), 865–870. http://doi.org/10.1080/02755947.2015.1059909
  55. Taylor, P., Howell, D. H., Cowley, P. D., Childs, A., & Weyl, O. L. F. (2015). Movement behaviour of largemouth bass Micropterus salmoides in a South African impoundment. African Zoology, 37-41. http://doi.org/10.1080/15627020.2015.1040837
  56. Udyawer, V., Read, M., Hamann, M., Simpfendorfer, C. A., & Heupel, M. R. (2015). Effects of environmental variables on the movement and space use of coastal sea snakes over multiple temporal scales. Journal of Experimental Marine Biology and Ecology, 473, 26–34. http://doi.org/10.1016/j.jembe.2015.07.011
  57. Udyawer, V., Simpfendorfer, C. A., & Heupel, M. R. (2015). Diel patterns in three-dimensional use of space by sea snakes. Animal Biotelemetry, 3(1), 29. http://doi.org/10.1186/s40317-015-0063-6
  58. Urrego-Blanco, J., J. Sheng, and F. Dupont (2015) Assessing the performance of one-way and two-way nesting techniques for the shelf circulation modelling system of the eastern Canadian shelf, Ocean Modelling (in press).
  59. Wilson, A. D. M., Brownscombe, J. W., Krause, J., Krause, S., Gutowsky, L. F. G., Brooks, E. J., & Cooke, S. J. (2015). Integrating network analysis, sensor tags, and observation to understand shark ecology and behavior. Behavioral Ecology, 00, 1–10. http://doi.org/10.1093/beheco/arv115
  60. Yurkowski D.J., N.E. Hussey, C. Semeniuk, S.H. Ferguson & A.T. Fisk (2015). Effects of chemical lipid-extraction and the utility of lipid-normalization models on stable isotope values in arctic marine mammal tissues. Polar Biology, 38:131-143.

2014 Peer-Reviewed Scientific Journal Articles – Published

  1. Afonso, P., McGinty, N., Graça, G., Fontes, J., Inácio, M., Totland, A., & Menezes, G. (2014) Vertical Migrations of a Deep-Sea Fish and Its Prey. PLoS ONE, 9(5): e97884. http://doi.org/10.1371/journal.pone.0097884
  2. Anttila, K., Eliason, E. J., Kaukinen, K. H., Miller, K. M., & Farrell, A. P. (2014). Facing warm temperatures during migration: cardiac mRNA responses of two adult Oncorhynchus nerka populations to warming and swimming challenges. Journal of Fish Biology, 84(5), 1439–56. Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/24684400
  3. Baker, L. L., Jonsen, I. D., Mills Flemming, J. E., Lidgard, D. C., Bowen, W. D., Iverson, S. J., & Webber, D. M. (2014). Probability of detecting marine predator-prey and species interactions using novel hybrid acoustic transmitter-receiver tags. PloS One, 9(6), e98117. Retrieved from http://dx.plos.org/10.1371/journal.pone.0098117
  4. Béguer-Pon, M., Castonguay, M., Benchetrit, J., Hatin, D., Legault, M., Verreault, G., … Dodson, J. J. (2014). Large-scale, seasonal habitat use and movements of yellow American eels in the St. Lawrence River revealed by acoustic telemetry. Ecology of Freshwater Fish, 24: 99-111. doi: 1111/eff.12129
  5. Béguer-Pon, M., Castonguay, M., Benchetrit, J., Hatin, D., Legault, M., Verreault, G., Mailhot, Y., Tremblay, V., Lefaivre, D., and Dodson, J.J. (2014) Large scale migration patterns of silver American eels from the St. Lawrence River to the Gulf using acoustic telemetry. Canadian Journal of Fisheries and Aquatic Sciences 71(10): 1579-1592. doi: 10.1139/cjfas-2013-0217
  6. Brown, T. A., Alexander, C., Yurkowski, D. J., Ferguson, S. H., & Belt, S. T. (2014). Identifying variable sea ice carbon contributions to the Arctic ecosystem: A case study using highly branched isoprenoid lipid biomarkers in Cumberland Sound ringed seals. Oceanogr., 59(5), 1581–1589. Retrieved from http://wjweuyf.aslo.net/lo/toc/vol_59/issue_5/1581.pdf
  7. Burnett, N. J., Hinch, S. G., Braun, D. C., Casselman, M. T., Middleton, C. T., Wilson, S. M., & Cooke, S. J. (2014a). Burst Swimming in Areas of High Flow: Delayed Consequences of Anaerobiosis in Wild Adult Sockeye Salmon. Physiological and Biochemical Zoology, 87(5), 587–598. Retrieved from http://www.jstor.org/stable/10.1086/677219
  8. Carson, S., & Mills Flemming, J. E. (2014). Seal encounters at sea: A contemporary spatial approach using R-INLA. Ecological Modelling, 291, 175–181. Retrieved from http://www.sciencedirect.com/science/article/pii/S0304380014003597
  9. Cerutti-Pereyra, F., Thums, M., Austin, C., Bradshaw, C.J.A., Stevens, J.D., Babcock, R., Pillans, R., & Meekan, M.G. (2014) Restricted movements of juvenile rays in the lagoon of Ningaloo Reef, Western Australia – evidence for the existence of a nursery. Environmental Biology of Fishes, (97) (4): 371-383. doi:10.1007/s10641-013-0158-y
  10. Cook, K. V., Crossin, G. T., Patterson, D. A., Hinch, S. G., Gilmour, K. M., & Cooke, S. J. (2014). The stress response predicts migration failure but not migration rate in a semelparous fish. General and Comparative Endocrinology, 202, 44–9. Retrieved from http://www.sciencedirect.com/science/article/pii/S0016648014001385
  11. Cooke, S. J., Arlinghaus, R., Bartley, D. M., Beard, T. D., Cowx, I. G., Essington, T. E., … Watson, R. (2014). Where the waters meet: sharing ideas and experiences between inland and marine realms to promote sustainable fisheries management 1. Canadian Journal of Fisheries and Aquatic Sciences, 71(10), 1593–1601. Retrieved from http://www.nrcresearchpress.com/doi/abs/10.1139/cjfas-2014-0176#.VGYlS_nF-JQ
  12. Cooke, S. J., Killen, S. S., Metcalfe, J. D., McKenzie, D. J., Mouillot, D., Jorgensen, C., & Peck, M. A. (2014). Conservation physiology across scales: insights from the marine realm. Conservation Physiology, 2(1), cou024–cou024. Retrieved from http://conphys.oxfordjournals.org/content/2/1/cou024.abstract
  13. Cosandey-Godin, A., Teixeira Krainski, E., Worm, B., & Mills Flemming, J. E. (2014). Applying Bayesian spatio-temporal models to fisheries bycatch in the Canadian Arctic. Canadian Journal of Fisheries and Aquatic Sciences, 140929143805002. Retrieved from http://www.nrcresearchpress.com/doi/abs/10.1139/cjfas-2014-0159#.VFzo1fnF-JQ
  14. Crossin, G. T., Cooke, S. J., Goldbogen, J. A., & Phillips, R. A. (2014). Tracking fitness in marine vertebrates: current knowledge and opportunities for future research. MARINE ECOLOGY PROGRESS SERIES, 496, 1–17. Retrieved from http://myweb.dal.ca/gl414705/GT_Crossin_Lab/Publications_files/Crossin et al. 2014 MEPS Theme.pdf
  15. Daly, R., Smale, M.J., Cowley, P.D., & Froneman, P.W. (2014) Residency patterns and migration dynamics of adult bull sharks (Carcharhinus leucas) on the east coast of southern Africa. PloS ONE, 9(10): e109357. doi:10.1371/journal.pone.0109357.
  16. Donaldson, M. R., Hinch, S. G., Jeffries, K. M., Patterson, D. A., Cooke, S. J., Farrell, A. P., & Miller, K. M. (2014). Species- and sex-specific responses and recovery of wild, mature pacific salmon to an exhaustive exercise and air exposure stressor. Comparative Biochemistry and Physiology. Part A, Molecular & Integrative Physiology, 173C, 7–16. Retrieved from http://www.sciencedirect.com/science/article/pii/S1095643314000427
  17. Donaldson, M. R., Hinch, S. G., Suski, C. D., Fisk, A. T., Heupel, M. R., and Cooke, S. J. (2014) Making connections in aquatic ecosystems with acoustic telemetry monitoring. Frontiers in Ecology and Environment, 12:565-573. doi:10.1890/130283
  18. Drenner, S. M., Hinch, S. G., Martins, E. G., Robichaud, D., Clark, T. D., Thompson, L. A., … Thomson, R. E. (2014). Variable thermal experience and diel thermal patterns of homing sockeye salmon in coastal marine waters. Marine Ecology Progress Series, 496, 109–124. Retrieved from http://www.int-res.com/abstracts/meps/v496/p109-124/
  19. Farrell, A. P., Eliason, E. J., Clark, T. D., & Steinhausen, M. F. (2014). Oxygen removal from water versus arterial oxygen delivery: calibrating the Fick equation in Pacific salmon. Journal of Comparative Physiology. B, Biochemical, Systemic, and Environmental Physiology, 184(7), 855–64. Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/25031037
  20. Fontes, J., Schmiing, M., & Afonso, P. (2014) Permanent aggregations of a pelagic predator at shallow seamounts. Marine Biology, 161(6): 1349–1360. http://doi.org/10.1007/s00227-014-2423-9
  21. Furey, N. B., Hinch, S. G., Lotto, A. G., and Beauchamp, D. A. (2014) Extensive feeding on sockeye salmon Oncorhynchus nerka smolts by bull trout Salvelinus confluentus during initial outmigration into a small, unregulated, and inland British Columbia river. Journal of Fish Biology, 86(1): 392-401. doi: 10.1111/jfb.12567
  22. Gale, M. K., Hinch, S. G., Cooke, S. J., Donaldson, M. R., Eliason, E. J., Jeffries, K. M., … Patterson, D. A. (2014). Observable impairments predict mortality of captured and released sockeye salmon at various temperatures. Conservation Physiology, 2(1), cou029–cou029. Retrieved from http://conphys.oxfordjournals.org/content/2/1/cou029.short
  23. Gannon, R., Taylor, M.D., Suthers, I.M., Gray, C.A., van der Meulen, D.E., & Payne, N.L. (2014) Upper- and lower-thermal regulation of performance in a free-ranging ectotherm: behavioural plasticity and climate change vulnerability. Journal of Experimental Biology
  24. Hammerschlag, N., Cooke, S. J., Gallagher, A. J., & Godley, B. J. (2014). Considering the fate of electronic tags: interactions with stakeholders and user responsibility when encountering tagged aquatic animals. Methods in Ecology and Evolution, n/a–n/a. Retrieved from http://doi.wiley.com/10.1111/2041-210X.12248
  25. Hussey, N. E., Macneil, M. A., McMeans, B. C., Olin, J. A., Dudley, S. F. J., Cliff, G., … Fisk, A. T. (2014). Rescaling the trophic structure of marine food webs. Ecology Letters, 17(2), 239–50. Retrieved from http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3912912&tool=pmcentrez&rendertype=abstract
  26. Jeffries, K. M., Hinch, S. G., Gale, M. K., Clark, T. D., Lotto, A. G., Casselman, M. T., Li, S., Rechisky, E. L., Porter, A. D., Welch, D. W., and Miller, K. M. (2014) Immune response genes and pathogen presence predict migration survival in wild salmon smolts. Molecular Ecology, 23(23): 5803-5815. doi/10.1111/mec.12980
  27. Jeffries, K. M., Hinch, S. G., Sierocinski, T., Pavlidis, P., & Miller, K. M. (2014). Transcriptomic responses to high water temperature in two species of Pacific salmon. Evolutionary Applications, 7(2), 286–300. Retrieved from http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3927889&tool=pmcentrez&rendertype=abstract
  28. Jepsen, N., Aarestrup, K., & Cooke, S. J. (2014). Tagging Fish in the Field: Ethical and Procedural Considerations. A Comment to the Recent Paper of D. Mulcahy; Legal, Ethical and Procedural Bases for the Use of Aseptic Techniques to Implant Electronic Devices, Journal of Fish and Wildlife Management 4:2. Journal of Fish and Wildlife Management, 5(2), 1–4. Retrieved from http://www.fwspubs.org/doi/pdf/10.3996/122013-JFWM-077
  29. Lacroix, G. L., & Fleming, I. A. (2014). Large pelagic predators could jeopardize the recovery of endangered Atlantic salmon. Canadian Journal of Fisheries and Aquatic Sciences, 71(3), 343–350. Retrieved from http://www.nrcresearchpress.com/doi/abs/10.1139/cjfas-2013-0458#.VGZPrfnF-JQ
  30. Lagman, K. B., Fennel, K., Thompson, K. R., & Bianucci, L. (2014). Assessing the utility of frequency dependent nudging for reducing biases in biogeochemical models. Ocean Modelling, 81, 25–35. Retrieved from http://www.sciencedirect.com/science/article/pii/S1463500314000808
  31. Lidgard, D. C., Bowen, W. D., Jonsen, I. D., & Iverson, S. J. (2014). Predator-borne acoustic transceivers and GPS tracking reveal spatiotemporal patterns of encounters with acoustically tagged fish in the open ocean. MARINE ECOLOGY PROGRESS SERIES, 501, 157–168. Retrieved from http://www.int-res.com/articles/meps2014/501/m501p157.pdf
  32. Lidgard, D. C., Bowen, W. D., Jonsen, I. D., McConnell, B. J., Lovell, P., Webber, D. M., … Iverson, S. J. (2014). Transmitting species-interaction data from animal-borne transceivers through Service Argos using Bluetooth communication. Methods in Ecology and Evolution, 5(9), 864–871. Retrieved from http://doi.wiley.com/10.1111/2041-210X.12235
  33. Martins, E. G., Gutowsky, L. F. G., Harrison, P. M., Mills Flemming, J. E., Jonsen, I. D., Zhu, D. Z., … Cooke, S. J. (2014). Behavioral attributes of turbine entrainment risk for adult resident fish revealed by acoustic telemetry and state-space modeling. Animal Biotelemetry, 2(13), 1–13. Retrieved from http://www.biomedcentral.com/content/pdf/2050-3385-2-13.pdf
  34. Mattern, J. P., Fennel, K., & Dowd, M. (2014). Periodic time-dependent parameters improving forecasting abilities of biological ocean models. Geophysical Research Letters, 41(19), 6848–6854. Retrieved from http://doi.wiley.com/10.1002/2014GL061178
  35. McLean, M. F., Simpfendorfer, C. A., Heupel, M. R., Dadswell, M. J., & Stokesbury, M. J. W. (2014). Diversity of behavioural patterns displayed by a summer feeding aggregation of Atlantic sturgeon in the intertidal region of Minas Basin, Bay of Fundy, Canada. Marine Ecology Progress Series, 496, 59–69. Retrieved from http://www.int-res.com/abstracts/meps/v496/p59-69/
  36. Miller, K. M., Teffer, A., Tucker, S., Li, S., Schulze, A. D., Trudel, M., … Hinch, S. G. (2014). Infectious disease, shifting climates, and opportunistic predators: cumulative factors potentially impacting wild salmon declines. Evolutionary Applications, 7(7), 812–855. Retrieved from http://doi.wiley.com/10.1111/eva.12164
  37. Naumann, C., Robinson, J. P. W., Freshwater, C., Hertz, E., Stormer, D., Teffer, A., & Juanes, F. (2014). Overfishing: What Everyone Needs to Know, by Ray Hilborn with Ulrike Hilborn. Fisheries, 39(5), 222–222. Retrieved from http://dx.doi.org/10.1080/03632415.2014.903839
  38. Nguyen, V. M., Martins, E. G., Robichaud, D., Raby, G. D., Donaldson, M. R., Lotto, A. G., … Cooke, S. J. (2014). Disentangling the roles of air exposure, gill net injury, and facilitated recovery on the postcapture and release mortality and behavior of adult migratory sockeye salmon (Oncorhynchus nerka) in freshwater. Physiological and Biochemical Zoology : PBZ, 87(1), 125–35. Retrieved from http://www.jstor.org/stable/10.1086/669530
  39. Payne, N.L., Taylor, M.D., Watanabe, J., & Semmens, J.M. (2014) From physiology to physics: what can biotelemetry tell us about aquatic animals? Journal of Experimental Biology, 217: 317-322.
  40. Peklova, I., Hussey, N. E., Hedges, K. J., Treble, M. A., & Fisk, A. T. (2014). Movement, depth and temperature preferences of an important bycatch species, Arctic skate Amblyraja hyperborea, in Cumberland Sound, Canadian Arctic. Endangered Species Research, 23(3), 229–240.
  41. Pollet, I. L., Ronconi, R. A., Jonsen, I. D., Leonard, M. L., Taylor, P. D., & Shutler, D. (2014). Foraging movements of Leach’s storm-petrels Oceanodroma leucorhoa during incubation. Journal of Avian Biology, 45(4), 305–314. Retrieved from http://doi.wiley.com/10.1111/jav.00361
  42. Pursche, A.R., Suthers, I.M., & Taylor, M.D. (2014) The effect of targeted stocking on behaviour and space utilisation of a released finfish. ICES Journal of Marine Science. doi:10.1093/icesjms/fst209
  43. Raby, G. D., Donaldson, M. R., Nguyen, V. M., Taylor, M. K., Sopinka, N. M., Cook, K. V., … Cooke, S. J. (2014a). Bycatch mortality of endangered coho salmon: impacts, solutions, and aboriginal perspectives. Ecological Applications, 24(7), 1803–1819. Retrieved from http://www.esajournals.org/doi/abs/10.1890/13-1885.1
  44. Shan, S., Sheng, J., & Greenan, B. J. W. (2014). Physical processes affecting circulation and hydrography in the Sable Gully of Nova Scotia. Deep Sea Research Part II: Topical Studies in Oceanography, 104, 35–50. Retrieved from http://www.sciencedirect.com/science/article/pii/S096706451300249X
  45. Silva, M. A., Jonsen, I. D., Russell, D. J. F., Prieto, R., Thompson, D., & Baumgartner, M. F. (2014). Assessing performance of Bayesian state-space models fit to Argos satellite telemetry locations processed with Kalman filtering. PloS One, 9(3), e92277. Retrieved from http://www.plosone.org/article/info:doi/10.1371/journal.pone.0092277#pone-0092277-g007
  46. Sopinka, N. M., Hinch, S. G., Middleton, C. T., Hills, J. A., & Patterson, D. A. (2014). Mother knows best, even when stressed? Effects of maternal exposure to a stressor on offspring performance at different life stages in a wild semelparous fish. Oecologia, 175(2), 493–500. Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/24619199
  47. Spares, A. D., Dadswell, M. J., MacMillan, J., Madden, R., O’Dor, R. K., & Stokesbury, M. J. W. (2014). To fast or feed: an alternative life history for anadromous brook trout Salvelinus fontinalis overwintering within a harbour. Journal of Fish Biology, 85(3), 621–44. Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/24961666
  48. Stocks, J.R., Gray, C.A., & Taylor, M.D. (2014) Optimisation of acoustic telemetry array design in near-shore coastal environments. Marine Technology Society Journal, 48: 28-35.
  49. Stokesbury, K. D. E., Stokesbury, M. J. W., Balazik, M. T., & Dadswell, M. J. (2014). Use of the SAFE Index to Evaluate the Status of a Summer Aggregation of Atlantic Sturgeon in Minas Basin, Canada, and the Implication of the Index for the USA Endangered Species Designation of Atlantic and Shortnose Sturgeons. Reviews in Fisheries Science & Aquaculture, 22(3), 193–206. Retrieved from http://dx.doi.org/10.1080/23308249.2014.913005
  50. Taylor, M. K., Hasler, C. T., Findlay, C. S., Lewis, B., Schmidt, D. C., Hinch, S. G., & Cooke, S. J. (2014). Hydrologic Correlates of Bull Trout (Salvelinus confluentus ) Swimming Activity in a Hydropeaking River. River Research and Applications, 30(6), 756–765. Retrieved from http://doi.wiley.com/10.1002/rra.2673
  51. Taylor, M.D., van der Meulen, D.E., Walsh, C.T., Reinfelds, I.V., Ives, M.C., & Gray, C.A. (2014) Shock, stress or signal? Implications of freshwater flows for a top-level estuarine predator. PLoS One, 9: e95680. DOI: 10.1371/journal.pone.0095680
  52. Urrego-Blanco, J., & Sheng, J. (2014a). Formation and distribution of sea ice in the Gulf of St. Lawrence: A process-oriented study using a coupled ocean-ice model. Journal of Geophysical Research: Oceans, n/a–n/a. Retrieved from http://doi.wiley.com/10.1002/2014JC010185
  53. Urrego-Blanco, J., & Sheng, J. (2014b). Study on subtidal circulation and variability in the Gulf of St. Lawrence, Scotian Shelf, and Gulf of Maine using a nested-grid shelf circulation model. Ocean Dynamics, 64(3), 385–412. Retrieved from http://link.springer.com/10.1007/s10236-013-0688-z
  54. Whitney, C., Hinch, S. G., and Patterson, D. A. (2014) Population origin and water temperature affect development timing in embryonic sockeye salmon. Transactions of the American Fisheries Society, 143: 1316-1329. doi: 10.1080/00028487.2014.935481
  55. Wilson, S. M., Hinch, S. G., Drenner, S. M., Martins, E. G., Furey, N. B., Patterson, D. A., … Cooke, S. J. (2014). Coastal marine and in-river migration behaviour of adult sockeye salmon en route to spawning grounds. Marine Ecology Progress Series, 496, 71–84. Retrieved from http://www.int-res.com/abstracts/meps/v496/p71-84/
  56. Wilson, S. M., Raby, G. D., Burnett, N. J., Hinch, S. G., & Cooke, S. J. (2014). Looking beyond the mortality of bycatch: sublethal effects of incidental capture on marine animals. Biological Conservation, 171, 61–72. Retrieved from http://www.sciencedirect.com/science/article/pii/S0006320714000226
  57. Wilson, S. M., Taylor, J. J., Mackie, T. A., Patterson, D. A., Cooke, S. J., & Willmore, W. G. (2014). Oxidative stress in Pacific salmon (Oncorhynchus spp.) during spawning migration. Physiological and Biochemical Zoology : PBZ, 87(2), 346–52. Retrieved from http://www.jstor.org/stable/10.1086/674798
  58. Yurkowski, D. J., Hussey, N. E., Semeniuk, C., Ferguson, S. H., & Fisk, A. T. (2014). Effects of lipid extraction and the utility of lipid normalization models on δ13C and δ15N values in Arctic marine mammal tissues. Polar Biology. Retrieved from http://link.springer.com/10.1007/s00300-014-1571-1

2013 Peer-Reviewed Scientific Journal Articles – Published

  1. Apostle, R., Dadswell, M. J., Engler-Palma, C., Litvak, M. K., McLean, M. F., Stokesbury, M. J. W., … VanderZwaag, D. L. (2013). Sustaining Atlantic Sturgeon: Stitching a Stronger Scientific and Governance Net. Journal of International Wildlife Law & Policy, 16(2-3), 170–197. Retrieved from http://dx.doi.org/10.1080/13880292.2013.805062
  2. Beardsall, J. W., McLean, M. F., Cooke, S. J., Wilson, B. C., Dadswell, M. J., Redden, A. M., & Stokesbury, M. J. W. (2013). Consequences of Incidental Otter Trawl Capture on Survival and Physiological Condition of Threatened Atlantic Sturgeon. Transactions of the American Fisheries Society, 142(5), 1202–1214. Retrieved from http://dx.doi.org/10.1080/00028487.2013.806347
  3. Bestley, S., Jonsen, I. D., Hindell, M. A., Guinet, C., & Charrassin, J. B. (2013). Integrative modelling of animal movement: incorporating in situ habitat and behavioural information for a migratory marine predator. Biological Sciences / The Royal Society, 280(1750), 20122262. Retrieved from http://rspb.royalsocietypublishing.org/content/280/1750/20122262.abstract?sid=6d5900b8-fc10-4367-b697-996c4bb84ee2
  4. Broell, F., Noda, T., Wright, S., Domenici, P., Steffensen, J. F., Auclair, J. P., & Taggart, C. T. (2013). Accelerometer tags: detecting and identifying activities in fish and the effect of sampling frequency. The Journal of Experimental Biology, 216(Pt 7), 1255–64. Retrieved from http://jeb.biologists.org/content/216/7/1255.short
  5. Brown, T. A., Belt, S. T., Ferguson, S. H., Yurkowski, D. J., Davison, N. J., Barnett, J. E. F., & Jepson, P. D. (2013). Identification of the sea ice diatom biomarker IP25 and related lipids in marine mammals: A potential method for investigating regional variations in dietary sources within higher trophic level marine systems. Journal of Experimental Marine Biology and Ecology, 441, 99–104. Retrieved from http://www.sciencedirect.com/science/article/pii/S0022098113000324
  6. Burnett, N. J., Hinch, S. G., Donaldson, M. R., Furey, N. B., Patterson, D. A., Roscoe, D. W., & Cooke, S. J. (2013). Alterations to dam-spill discharge influence sex-specific activity, behaviour and passage success of migrating adult sockeye salmon. Ecohydrology, 10.1002/eco.1440. Retrieved from http://doi.wiley.com/10.1002/eco.1440
  7. Chen, Z., Anttila, K., Wu, J., Whitney, C. K., Hinch, S. G., & Farrell, A. P. (2013). Optimum and maximum temperatures of sockeye salmon ( Oncorhynchus nerka ) populations hatched at different temperatures. Canadian Journal of Zoology, 91(5), 265–274. Retrieved from http://www.nrcresearchpress.com/doi/abs/10.1139/cjz-2012-0300#.VGn8V_nF-JQ
  8. Chin, A., Heupel, M., Simpfendorfer, C., & Tobin, A. (2013) Ontogenetic movements of juvenile blacktip reef sharks: evidence of dispersal and connectivity between coastal habitats and coral reefs. Aquatic Conservation: Marine and Freshwater Ecosystems. 23 (3): 468-474. doi:10.1002/aqc.2349
  9. Chin, A., Simpfendorfer, C., Tobin, A., & Heupel, M. (2013) Validated age, growth and reproductive biology of Carcharhinus melanopterus, a widely distributed and exploited reef shark. Marine and Freshwater Research, 64 (10): 965-975. doi:10.1071/MF13017
  10. Chin, A., Tobin, A., Heupel, M., & Simpfendorfer, C. (2013) Population structure and residency patterns of the blacktip reef shark Carcharhinus melanopterus in turbid coastal environments. Journal of Fish Biology. 82: 1192-1210. doi:10.1111/jfb.12057
  11. Collins, A. L., Hinch, S. G., Welch, D. W., Cooke, S. J., & Clark, T. D. (2013). Intracoelomic Acoustic Tagging of Juvenile Sockeye Salmon: Swimming Performance, Survival, and Postsurgical Wound Healing in Freshwater and during a Transition to Seawater. Transactions of the American Fisheries Society, 142(2), 515–523. Retrieved from http://dx.doi.org/10.1080/00028487.2012.743928
  12. Cooke, S. J., & Hinch, S. G. (2013). Improving the reliability of fishway attraction and passage efficiency estimates to inform fishway engineering, science, and practice. Ecological Engineering, 58, 123–132. Retrieved from http://www.sciencedirect.com/science/article/pii/S0925857413002061
  13. Cooke, S. J., Donaldson, M. R., O’Connor, C. M., Raby, G. D., Arlinghaus, R., Danylchuk, A. J., … Suski, C. D. (2013). The physiological consequences of catch-and-release angling: perspectives on experimental design, interpretation, extrapolation and relevance to stakeholders. Fisheries Management and Ecology, 20(2-3), 268–287. Retrieved from http://doi.wiley.com/10.1111/j.1365-2400.2012.00867.x
  14. Cooke, S. J., Lapointe, N. W. R., Martins, E. G., Thiem, J. D., Raby, G. D., Taylor, M. K., … Cowx, I. G. (2013). Failure to engage the public in issues related to inland fishes and fisheries: strategies for building public and political will to promote meaningful conservation. Journal of Fish Biology, 83(4), 997–1018. Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/24090559
  15. Cooke, S. J., Nguyen, V. M., Murchie, K. J., Thiem, J. D., Donaldson, M. R., Hinch, S. G., … Fisk, A. T. (2013). To Tag or not to Tag: Animal Welfare, Conservation, and Stakeholder Considerations in Fish Tracking Studies That Use Electronic Tags. Journal of International Wildlife Law & Policy, 16(4), 352–374. Retrieved from http://dx.doi.org/10.1080/13880292.2013.805075
  16. Currey, L., Heupel, M., Simpfendorfer, C., & Clark, T.D. (2013) Blood lactate loads of redthroat emperor Lethrinus miniatus associated with angling stress and exhaustive exercise. Journal of Fish Biology. 83 (5): 1401-1406. doi:10.1111/jfb.12216
  17. Dadswell, M. J., Nau, G., & Stokesbury, M. J. W. (2013). First verified record of shortnose sturgeon, Acipenser brevirostrum LeSueur, 1818, in Minas Basin, Bay of Fundy, Nova Scotia, Canada. Proceedings of the Nova Scotian Institute of Science, 47(2), 273–279. Retrieved from http://coastalecology.acadiau.ca/tl_files/sites/cel/Publications/NSIS Vol 47 Part 2.pdf#page=73
  18. Davis, B., VanderZwaag, D. L., Cosandey-Godin, A., Hussey, N. E., Kessel, S. T., & Worm, B. (2013). The Conservation of the Greenland Shark (Somniosus microcephalus ): Setting Scientific, Law, and Policy Coordinates for Avoiding a Species at Risk. Journal of International Wildlife Law & Policy, 16(4), 300–330. Retrieved from http://dx.doi.org/10.1080/13880292.2013.805073
  19. Donaldson, M. R., Raby, G. D., Nguyen, V. N., Hinch, S. G., Patterson, D. A., Farrell, A. P., … MacLatchy, D. (2013). Evaluation of a simple technique for recovering fish from capture stress: integrating physiology, biotelemetry, and social science to solve a conservation problem. Canadian Journal of Fisheries and Aquatic Sciences, 70(1), 90–100. Retrieved from http://www.nrcresearchpress.com/doi/abs/10.1139/cjfas-2012-0218#.VGYnwfnF-JQ
  20. Duff, J., Dean, H., Gazit, T., Taggart, C. T., & Cavanagh, J. H. (2013). On the Right Way to Right Whale Protections in the Gulf of Maine—Case Study. Journal of International Wildlife Law & Policy, 16(4), 229–265. Retrieved from http://dx.doi.org/10.1080/13880292.2013.805065
  21. Eliason, E. J., Clark, T. D., Hinch, S. G., & Farrell, A. P. (2013a). Cardiorespiratory collapse at high temperature in swimming adult sockeye salmon. Conservation Physiology, 1(1), cot008–cot008. Retrieved from http://conphys.oxfordjournals.org/content/1/1/cot008.short
  22. Eliason, E. J., Clark, T. D., Hinch, S. G., & Farrell, A. P. (2013)b. Cardiorespiratory performance and blood chemistry during swimming and recovery in three populations of elite swimmers: Adult sockeye salmon. Comparative Biochemistry and Physiology. Part A, Molecular & Integrative Physiology, 166(2), 385–97. Retrieved from http://www.sciencedirect.com/science/article/pii/S1095643313001992
  23. Eliason, E. J., Wilson, S. M., Farrell, A. P., Cooke, S. J., & Hinch, S. G. (2013). Low cardiac and aerobic scope in a coastal population of sockeye salmon Oncorhynchus nerka with a short upriver migration. Journal of Fish Biology, 82(6), 2104–12. Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/23731155
  24. Engler-Palma, C., VanderZwaag, D. L., Apostle, R., Castonguay, M., Dodson, J. J., Feltes, E., … White, R. (2013). Sustaining American Eels: A Slippery Species for Science and Governance. Journal of International Wildlife Law & Policy, 16(2-3), 128–169. Retrieved from http://dx.doi.org/10.1080/13880292.2013.805060
  25. Ferguson, A., Harvey, E.S., Taylor, M., & Knott, N. (2013) A herbivore knows its patch: the key grazer luderick, Girella tricuspidata, exhibits strong site fidelity on shallow subtidal reefs in a temperate marine park. PLoS One, 8: e65838. doi:10.1371/journal.pone.0065838
  26. Gale, M. K., Hinch, S. G., & Donaldson, M. R. (2013). The role of temperature in the capture and release of fish. Fish and Fisheries, 14(1), 1–33. Retrieved from http://doi.wiley.com/10.1111/j.1467-2979.2011.00441.x
  27. Gazit, T., Apostle, R., & Branton, R. (2013). Deployment, Tracking, and Data Management: Technology and Science for a Global Ocean Tracking Network. Journal of International Wildlife Law & Policy, 16(2-3), 112–127. Retrieved from http://dx.doi.org/10.1080/13880292.2013.805058
  28. Gazit, T., Lidgard, D. C., & Sykes, K. (2013). Changing Environments: Tracking the Scientific, Socio-political, Legal, and Ethical Currents of the Grey Seal-Cod Debate in Atlantic Canada. Journal of International Wildlife Law & Policy, 16(4), 266–299. Retrieved from http://dx.doi.org/10.1080/13880292.2013.805070
  29. Halfyard, E. A., Gibson, A. J. F., Stokesbury, M. J. W., Ruzzante, D. E., Whoriskey, F. G., & Zech, J. M. (2013). Correlates of estuarine survival of Atlantic salmon postsmolts from the Southern Upland, Nova Scotia, Canada. Canadian Journal of Fisheries and Aquatic Sciences, 70(3), 452–460. Retrieved from http://www.nrcresearchpress.com/doi/abs/10.1139/cjfas-2012-0287#.VEplg_nF-JQ
  30. Harrison, P. M., Gutowsky, L. F. G., Martins, E. G., Patterson, D. A., Leake, A., Cooke, S. J., … Tierney, K. (2013). Diel vertical migration of adult burbot: a dynamic trade-off among feeding opportunity, predation avoidance, and bioenergetic gain. Canadian Journal of Fisheries and Aquatic Sciences, 70(12), 1765–1774. Retrieved from http://www.nrcresearchpress.com/doi/abs/10.1139/cjfas-2013-0183#.VGoeJfnF-JQ
  31. Huveneers, C., Rogers, P., Beckman, C., Semmens, J., Bruce, B., & Seuront, L. (2013) Effects of the fine-scale movement of white sharks (Carcharondon carcharias). Marine Biology
  32. Jonsen, I. D., Basson, M., Bestley, S., Bravington, M. V., Patterson, T. A., Pedersen, M. W., … Wotherspoon, S. J. (2013). State-space models for bio-loggers: A methodological road map. Deep Sea Research Part II: Topical Studies in Oceanography, 88-89, 34–46. Retrieved from http://www.sciencedirect.com/science/article/pii/S096706451200094X
  33. Katavouta, A., & Thompson, K. R. (2013). Downscaling ocean conditions: Experiments with a quasi-geostrophic model. Ocean Modelling, 72, 231–241. Retrieved from http://www.sciencedirect.com/science/article/pii/S1463500313001819
  34. Kessel, S. T., Cooke, S. J., Heupel, M. R., Hussey, N. E., Simpfendorfer, C. A., Vagle, S., & Fisk, A. T. (2013). A review of detection range testing in aquatic passive acoustic telemetry studies. Reviews in Fish Biology and Fisheries, 24(1), 199–218. Retrieved from http://link.springer.com/10.1007/s11160-013-9328-4
  35. Martins, E. G., Gutowsky, L. F. G., Harrison, P. M., Patterson, D. A., Power, M., Zhu, D. Z., … Cooke, S. J. (2013). Forebay use and entrainment rates of resident adult fish in a large hydropower reservoir. Aquatic Biology, 19, 253–263. Retrieved from http://www.hydronet.umontreal.ca/articles/Eduardo_G_M_et_al_b019p253-(20).pdf
  36. Matley, J. K., Fisk, A. T., & Dick, T. A. (2013). The foraging ecology of Arctic cod (Boreogadus saida) during open water (July–August) in Allen Bay, Arctic Canada. Marine Biology, 160(11), 2993–3004. Retrieved from http://link.springer.com/10.1007/s00227-013-2289-2
  37. McLean, M. F., Dadswell, M. J., & Stokesbury, M. J. W. (2013). Feeding ecology of Atlantic sturgeon, Acipenser oxyrinchus oxyrinchus Mitchill, 1815 on the infauna of intertidal mudflats of Minas Basin, Bay of Fundy. Journal of Applied Ichthyology, 29(3), 503–509. Retrieved from http://doi.wiley.com/10.1111/jai.12175
  38. Nguyen, V. M., Rudd, M. A., Hinch, S. G., & Cooke, S. J. (2013). Recreational anglers’ attitudes, beliefs, and behaviors related to catch-and-release practices of Pacific salmon in British Columbia. Journal of Environmental Management, 128, 852–65. Retrieved from http://www.sciencedirect.com/science/article/pii/S030147971300412X
  39. Ohashi, K., & Sheng, J. (2013). Influence of St. Lawrence River discharge on the circulation and hydrography in Canadian Atlantic waters. Continental Shelf Research, 58, 32–49. Retrieved from http://www.sciencedirect.com/science/article/pii/S0278434313000630
  40. Payne, N., van der Meulen, D., Gannon, R., Semmens, J., Suthers, I., Gray, C., & Taylor, M. (2013) Rain reverses diel activity rhythms in bream. Proceedings of the Royal Society Series B. 280 (1750): 20122363. DOI: 10.1098/rspb.2012.2363
  41. Phyne, J. G., Stokesbury, M. J. W., McLean, M. F., & Saunders, P. M. (2013). Sustainability and the Atlantic Bluefin Tuna: Science, Socioeconomic Forces, and Governance. Journal of International Wildlife Law & Policy, 16(2-3), 198–226. Retrieved from http://dx.doi.org/10.1080/13880292.2013.805064
  42. Pursche, A., Suthers, I., & Taylor, M. (2013) Post-release monitoring of site and group fidelity in acoustically tagged stocked fish. Fisheries Management and Ecology, 20 (5): 445-453. doi:10.111/fme.12031
  43. Pursche, A., Walsh, C., & Taylor, M. (2013) Evaluation of a novel external tag-mount for acoustic tracking of small finfish. Fisheries Management and Ecology, 21 (2): 169-172. doi:10.1111/fme.12051
  44. Raby, G. D., Cooke, S. J., Cook, K. V., McConnachie, S. H., Donaldson, M. R., Hinch, S. G., … Farrell, A. P. (2013). Resilience of Pink Salmon and Chum Salmon to Simulated Fisheries Capture Stress Incurred upon Arrival at Spawning Grounds. Transactions of the American Fisheries Society, 142(2), 524–539. Retrieved from http://dx.doi.org/10.1080/00028487.2012.746241
  45. Robinson, K. A., Hinch, S. G., Gale, M. K., Clark, T. D., Wilson, S. M., Donaldson, M. R., … Patterson, D. A. (2013). Effects of post-capture ventilation assistance and elevated water temperature on sockeye salmon in a simulated capture-and-release experiment. Conservation Physiology, 1(1), cot015–cot015. Retrieved from http://conphys.oxfordjournals.org/content/1/1/cot015.short
  46. Semmens, J., Payne, N., Huveneers, C., Sims, D.W., & Bruce, B. (2013) Feeding requirements of white sharks may be higher than originally thought. Scientific Reports, 3. doi:10.1038/srep01471
  47. Shan, S., Sheng, J., & Greenan, B. J. W. (2013). Modelling study of three-dimensional circulation and particle movement over the Sable Gully of Nova Scotia. Ocean Dynamics, 64(1), 117–142. Retrieved from http://link.springer.com/10.1007/s10236-013-0672-7
  48. Silva, M. A., Prieto, R., Jonsen, I. D., Baumgartner, M. F., & Santos, R. S. (2013). North Atlantic blue and fin whales suspend their spring migration to forage in middle latitudes: building up energy reserves for the journey? PloS One, 8(10), e76507. Retrieved from http://www.plosone.org/article/info:doi/10.1371/journal.pone.0076507#pone-0076507-g008
  49. Sopinka, N. M., Hinch, S. G., Lotto, A. G., Whitney, C. K., & Patterson, D. A. (2013). Does among-population variation in burst swimming performance of sockeye salmon Oncorhynchus nerka fry reflect early life migrations? Journal of Fish Biology, 83(5), 1416–24. Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/24117961
  50. Speed, C.W., O’Shea, O.R., Meekan, & M.G. (2013) Transmitter attachment and release methods for short-term shark and stingray tracking on coral reefs. Marine Biology, 160: 1041-1050. doi:10.1007/s00227-012-2151-y
  51. Stehfest, K., Patterson, T., Dagorn, L., Holland, K., Itano, D., & Semmens, J. (2013) Network analysis of acoustic tracking data reveals the structure and stability of fish aggregations in the open ocean. Animal Behaviour, 85: 839-848. doi:10.1016/j.anbehav.2013.02.003
  52. Swain, D. P., Jonsen, I. D., Simon, J. E., Davies, T. D., & Hilborn, R. (2013). Contrasting decadal trends in mortality between large and small individuals in skate populations in Atlantic Canada. Canadian Journal of Fisheries and Aquatic Sciences, 70(1), 74–89. Retrieved from http://www.nrcresearchpress.com/doi/abs/10.1139/cjfas-2012-0179#.VFzfafnF-JQ
  53. Taylor, M. K., Hasler, C. T., Hinch, S. G., Lewis, B., Schmidt, D. C., & Cooke, S. J. (2013). Reach-scale movements of bull trout ( Salvelinus confluentus ) relative to hydropeaking operations in the Columbia River, Canada. Ecohydrology, n/a–n/a. Retrieved from http://doi.wiley.com/10.1002/eco.1429
  54. Taylor, M.D., McPhan, L., Gray, C.A., van der Meulen, D.E., & Payne, N.L. (2013) Interactive drivers of activity in a free-ranging estuarine predator. PLoS One, 8(11): e80962. DOI: 10.1371/journal.pone.0080962
  55. Udyawer, V., Simpfendorfer, C., Chin, A., Knip, D., & Heupel, M. (2013) Variable response of coastal sharks to severe tropical storms: environmental cues and changes in space use. Marine Ecology Progress Series, 480: 171-183. doi:10.3354/meps10244
  56. van der Meulen, D., Walsh, C., Taylor, M., & Gray, M. (2013) Habitat requirements and spawning strategy of an estuarine dependant fish, Percalates colonorum. Marine and Freshwater Research, 65 (3): 218-227. doi:10.1071/MF13060
  57. VanderZwaag, D. L., Apostle, R., & Cooke, S. J. (2013). Tracking and Protecting Marine Species at Risk: Scientific Advances, Sea of Governance Challenges. Journal of International Wildlife Law & Policy, 16(2-3), 105–111. Retrieved from http://dx.doi.org/10.1080/13880292.2013.805056
  58. Welch, D. W., Porter, A. D., Rechisky, A. L., Challenger, W. C., and Hinch, S. G. (2013) Critical Periods in the Marine Life History of Pacific Salmon? North Pacific Anadromous Fish Commission Technical Report No. 9: 179-183
  59. White, J, Heupel, M, Simpfendorfer, C, Tobin, A (2013) Incidence and availability of shark-like batoids of conservation concern to a gill-net fishery within the Great Barrier Reef Marine Park. Endangered Species Research, 19: 277-284.
  60. Whitehead, H., & Jonsen, I. D. (2013). Inferring animal densities from tracking data using Markov chains. PloS One, 8(4), e60901. Retrieved from http://www.plosone.org/article/info:doi/10.1371/journal.pone.0060901#pone-0060901-g003
  61. Whitney, C. K., Hinch, S. G., & Patterson, D. A. (2013). Provenance matters: thermal reaction norms for embryo survival among sockeye salmon Oncorhynchus nerka populations. Journal of Fish Biology, 82(4), 1159–76. Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/23557297
  62. Wilson, S. M., Hinch, S. G., Eliason, E. J., Farrell, A. P., & Cooke, S. J. (2013). Calibrating acoustic acceleration transmitters for estimating energy use by wild adult Pacific salmon. Comparative Biochemistry and Physiology. Part A, Molecular & Integrative Physiology, 164(3), 491–8. Retrieved from http://www.sciencedirect.com/science/article/pii/S1095643312005284
  63. Young, N., Gingras, I., Nguyen, V. M., Cooke, S. J., & Hinch, S. G. (2013). Mobilizing New Science into Management Practice: The Challenge of Biotelemetry for Fisheries Management, a Case Study of Canada’s Fraser River. Journal of International Wildlife Law & Policy, 16(4), 331–351. Retrieved from http://dx.doi.org/10.1080/13880292.2013.805074

2012 Peer-Reviewed Scientific Journal Articles – Published

  1. Afonso, P., Graça, G., Berke, G., & Fontes, J. (2012) First observations on seamount habitat use of blackspot seabream (Pagellus bogaraveo) using acoustic telemetry. Journal of Experimental Marine Biology and Ecology, 436-437: 1–10. doi.org/10.1016/j.jembe.2012.08.003
  2. Béguer-Pon, M., Benchetrit, J., Castonguay, M., Aarestrup, K., Campana, S. E., Stokesbury, M. J. W., & Dodson, J. J. (2012). Shark predation on migrating adult American eels (Anguilla rostrata) in the Gulf of St. Lawrence. PloS One, 7(10), e46830. Retrieved from http://dx.plos.org/10.1371/journal.pone.0046830
  3. Bennett, R. H., Cowley, P. D., Childs, A.-R., & Whitfield, A. K. (2012). Area-use patterns and diel movements of white steenbras Lithognathus lithognathus in a temporarily open/closed South African estuary, inferred from acoustic telemetry and long-term seine-netting data. African Journal of Marine Science, 34(1), 81–91. http://doi.org/10.2989/1814232X.2012.673287
  4. Bianucci, L., Fennel, K., & Denman, K. L. (2012). Role of sediment denitrification in water column oxygen dynamics: comparison of the North American East and West Coasts. Biogeosciences, 9(7), 2673–2682. Retrieved from http://www.biogeosciences.net/9/2673/2012/bg-9-2673-2012.html
  5. Breed, G. A., Costa, D. P., Jonsen, I. D., Robinson, P. W., & Mills Flemming, J. E. (2012). State-space methods for more completely capturing behavioral dynamics from animal tracks. Ecological Modelling, 235-236, 49–58. Retrieved from http://www.sciencedirect.com/science/article/pii/S0304380012001378
  6. Burd, B. J., & Thomson, R. E. (2012). Estimating Zooplankton Biomass Distribution in the Water Column Near the Endeavour Segment of Juan de Fuca Ridge Using Acoustic Backscatter and Concurrently Towed Nets. Oceanography, 25(1), 269–276. Retrieved from http://dx.doi.org/10.5670/oceanog.2012.25
  7. Cabanellas-Reboredo, M., Alos, J., Palmer, M., March, D., & O’Dor, R. (2012). Movement patterns of the European squid Loligo vulgaris during the inshore spawning season. Marine Ecology Progress Series, 466, 133–144. Retrieved from http://www.int-res.com/abstracts/meps/v466/p133-144/
  8. Cooke, S. J., & Thorstad, E. G. (2012). Is radio telemetry getting washed downstream? The changing role of radio telemetry in studies of freshwater ichthyofauna relative to other tagging and telemetry technology. American Fisheries Society Symposium, 76, 349–369. Retrieved from http://m.secure.fisheries.org/proofs/tag/cooke.pdf
  9. Cooke, S. J., Hinch, S. G., Donaldson, M. R., Clark, T. D., Eliason, E. J., Crossin, G. T., … Farrell, A. P. (2012). Conservation physiology in practice: how physiological knowledge has improved our ability to sustainably manage Pacific salmon during up-river migration. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 367(1596), 1757–69. Retrieved from http://rstb.royalsocietypublishing.org/content/367/1596/1757.short
  10. Cullen, J. J., Davis, R. F., & Huot, Y. (2012). Spectral model of depth-integrated water column photosynthesis and its inhibition by ultraviolet radiation. Global Biogeochemical Cycles, 26(1), n/a–n/a. Retrieved from http://doi.wiley.com/10.1029/2010GB003914
  11. Donaldson, M. R., Hinch, S. G., Raby, G. D., Patterson, D. A., Farrell, A. P., & Cooke, S. J. (2012). Population-specific consequences of fisheries-related stressors on adult sockeye salmon. Physiological and Biochemical Zoology : PBZ, 85(6), 729–39. Retrieved from http://www.jstor.org/stable/10.1086/664931
  12. Drenner, S. M., Clark, T. D., Whitney, C. K., Martins, E. G., Cooke, S. J., & Hinch, S. G. (2012). A synthesis of tagging studies examining the behaviour and survival of anadromous salmonids in marine environments. PloS One, 7(3), e31311. Retrieved from http://dx.plos.org/10.1371/journal.pone.0031311
  13. Edwards, A. M., Freeman, M. P., Breed, G. A., & Jonsen, I. D. (2012). Incorrect likelihood methods were used to infer scaling laws of marine predator search behaviour. PloS One, 7(10), e45174. Retrieved from http://dx.plos.org/10.1371/journal.pone.0045174
  14. Halfyard, E. A., Gibson, A. J. F., Ruzzante, D. E., Stokesbury, M. J. W., & Whoriskey, F. G. (2012). Estuarine survival and migratory behaviour of Atlantic salmon Salmo salar smolts. Journal of Fish Biology, 81(5), 1626–45. Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/23020565
  15. Hammill, E., Curtis, J. M. R., Patterson, D. A., Farrell, A. P., Sierocinski, T., Pavlidis, P., … Miller, K. M. (2012). Comparison of techniques for correlating survival and gene expression data from wild salmon. Ecology of Freshwater Fish, 21(2), 189–199. Retrieved from http://doi.wiley.com/10.1111/j.1600-0633.2011.00536.x
  16. Hazen, E. L., Jorgensen, S. J., Rykaczewski, R. R., Bograd, S. J., Foley, D. G., Jonsen, I. D., … Block, B. A. (2012). Predicted habitat shifts of Pacific top predators in a changing climate. Nature Climate Change, 3(3), 234–238. Retrieved from http://dx.doi.org/10.1038/nclimate1686
  17. Hinch, S. G., Cooke, S. J., Farrell, A. P., Miller, K. M., Lapointe, M., & Patterson, D. A. (2012). Dead fish swimming: a review of research on the early migration and high premature mortality in adult Fraser River sockeye salmon Oncorhynchus nerka. Journal of Fish Biology, 81(2), 576–99. Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/22803725
  18. Hussey, N. E., Olin, J. A., Kinney, M. J., McMeans, B. C., & Fisk, A. T. (2012). Lipid extraction effects on stable isotope values (δ13C and δ15N) of elasmobranch muscle tissue. Journal of Experimental Marine Biology and Ecology, 434-435, 7–15. Retrieved from http://www.sciencedirect.com/science/article/pii/S0022098112002754
  19. Jeffries, K. M., Hinch, S. G., Martins, E. G., Clark, T. D., Lotto, A. G., Patterson, D. A., … Miller, K. M. (2012). Sex and proximity to reproductive maturity influence the survival, final maturation, and blood physiology of Pacific salmon when exposed to high temperature during a simulated migration. Physiological and Biochemical Zoology : PBZ, 85(1), 62–73. Retrieved from http://www.jstor.org/stable/10.1086/663770
  20. Jeffries, K. M., Hinch, S. G., Sierocinski, T., Clark, T. D., Eliason, E. J., Donaldson, M. R., … Miller, K. M. (2012). Consequences of high temperatures and premature mortality on the transcriptome and blood physiology of wild adult sockeye salmon (Oncorhynchus nerka). Ecology and Evolution, 2(7), 1747–64. Retrieved from http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3434914&tool=pmcentrez&rendertype=abstract
  21. Johnson, J. E., Patterson, D. A., Martins, E. G., Cooke, S. J., & Hinch, S. G. (2012). Quantitative methods for analysing cumulative effects on fish migration success: a review. Journal of Fish Biology, 81(2), 600–31. Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/22803726
  22. Lefèvre, M. A., Stokesbury, M. J. W., Whoriskey, F. G., & Dadswell, M. J. (2012a). Atlantic salmon post-smolt migration routes in the Gulf of St. Lawrence. ICES Journal of Marine Science, 69(6), 981–990. Retrieved from http://icesjms.oxfordjournals.org/content/69/6/981.abstract
  23. Lefèvre, M. A., Stokesbury, M. J. W., Whoriskey, F. G., & Dadswell, M. J. (2012b). Migration of Atlantic salmon smolts and post-smolts in the Rivière Saint-Jean, QC north shore from riverine to marine ecosystems. Environmental Biology of Fishes, 96(9), 1017–1028. Retrieved from http://link.springer.com/10.1007/s10641-012-0100-8
  24. Lidgard, D. C., Bowen, W. D., Jonsen, I. D., & Iverson, S. J. (2012). Animal-borne acoustic transceivers reveal patterns of at-sea associations in an upper-trophic level predator. PloS One, 7(11), e48962. Retrieved from http://www.plosone.org/article/info:doi/10.1371/journal.pone.0048962#pone-0048962-g005
  25. MacNeil, M. A., McMeans, B. C., Hussey, N. E., Vecsei, P., Svavarsson, J., Kovacs, K. M., … Fisk, A. T. (2012). Biology of the Greenland shark Somniosus microcephalus. Journal of Fish Biology, 80(5), 991–1018. Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/22497371
  26. Marcoux, M., McMeans, B. C., Fisk, A. T., and Ferguson, S. H. (2012) Composition and temporal variation in the diet of the threatened population of belugas in Cumberland Sound. Marine Ecology Progress Series 471: 283–291
  27. Martins, E. G., Hinch, S. G., & Patterson, D. A. (2012). High river temperature reduces survival of sockeye salmon approaching spawning grounds and exacerbates female mortality. Canadian Journal of Fisheries and Aquatic Sciences, 69, 330–342. Retrieved from http://scholar.google.ca/scholar?q=high+river+temperature+reduces+survival+of+sockeye+salmon+approaching+spawning+grounds+and+exacerbates+female+mortality&btnG=&hl=en&as_sdt=0,5&as_ylo=2010#0
  28. Martins, E. G., Hinch, S. G., Cooke, S. J., & Patterson, D. A. (2012). Climate effects on growth, phenology, and survival of sockeye salmon (Oncorhynchus nerka): a synthesis of the current state of knowledge and future research directions. Reviews in Fish Biology and Fisheries, 22(4), 887–914. Retrieved from http://link.springer.com/10.1007/s11160-012-9271-9
  29. Matley, J. K., Crawford, R. E., & Dick, T. A. (2012a). Observation of common raven (Corvus corax) scavenging Arctic cod (Boreogadus saida) from seabirds in the Canadian High Arctic. Polar Biology, 35(7), 1119–1122. Retrieved from http://link.springer.com/10.1007/s00300-011-1148-1
  30. Matley, J. K., Crawford, R. E., & Dick, T. A. (2012b). Summer foraging behaviour of shallow-diving seabirds and distribution of their prey, Arctic cod (Boreogadus saida), in the Canadian Arctic. Polar Research, 31(15894), 1–11.
  31. Matley, J. K., Fisk, A. T., & Dick, T. A. (2012). Seabird predation on Arctic cod during summer in the Canadian Arctic. Marine Ecology Progress Series, 450, 219–228.
  32. Mattern, J. P., Fennel, K., & Dowd, M. (2012). Estimating time-dependent parameters for a biological ocean model using an emulator approach. Journal of Marine Systems, 96-97, 32–48.
  33. McConnachie, S. H., Cook, K. V., Patterson, D. A., Gilmour, K. M., Hinch, S. G., Farrell, A. P., & Cooke, S. J. (2012). Consequences of acute stress and cortisol manipulation on the physiology, behavior, and reproductive outcome of female Pacific salmon on spawning grounds. Hormones and Behavior, 62(1), 67–76. Retrieved from http://www.sciencedirect.com/science/article/pii/S0018506X12001419
  34. McKinney, M. A., McMeans, B. C., Tomy, G. T., Rosenberg, B., Ferguson, S. H., Morris, A., … Fisk, A. T. (2012). Trophic transfer of contaminants in a changing arctic marine food web: Cumberland Sound, Nunavut, Canada. Environmental Science & Technology, 46(18), 9914–22. Retrieved from http://dx.doi.org/10.1021/es302761p
  35. Nguyen, V. M., Raby, G. D., Hinch, S. G., & Cooke, S. J. (2012). Aboriginal fisher perspectives on use of biotelemetry technology to study adult Pacific salmon. Knowledge and Management of Aquatic Ecosystems, (406), 08. Retrieved from http://dx.doi.org/10.1051/kmae/2012025
  36. Nguyen, V. M., Rudd, M. A., Hinch, S. G., & Cooke, S. J. (2012). Differences in Information Use and Preferences Among Recreational Salmon Anglers: Implications for Management Initiatives to Promote Responsible Fishing. Human Dimensions of Wildlife, 17(4), 248–256. Retrieved from http://dx.doi.org/10.1080/10871209.2012.675412
  37. O’Toole, A. C., Dechraoui Bottein, M.-Y., Danylchuk, A. J., Ramsdell, J. S., & Cooke, S. J. (2012). Linking ciguatera poisoning to spatial ecology of fish: A novel approach to examining the distribution of biotoxin levels in the great barracuda by combining non-lethal blood sampling and biotelemetry. Science of The Total Environment, 427-428, 98–105. http://doi.org/10.1016/j.scitotenv.2011.11.053
  38. Peklova, I., Hussey, N. E., Hedges, K. J., Treble, M. A., and Fisk, A. T. (2012) Depth and temperature preferences of the deepwater flatfish, Greenland halibut (Reinhardtius hippoglossoides) in an Arctic marine ecosystem. Marine Ecology Progress Series 467: 193-205. Retrieved from http://www.researchgate.net/publication/237837760_Depth_and_temperature_preferences_of_the_deepwater_flatfish_Greenland_halibut_Reinhardtius_hippoglossoides_in_an_Arctic_marine_ecosystem
  39. Raby, G. D., Donaldson, M. R., Hinch, S. G., Patterson, D. A., Lotto, A. G., Robichaud, D., … Cooke, S. J. (2012). Validation of reflex indicators for measuring vitality and predicting the delayed mortality of wild coho salmon bycatch released from fishing gears. Journal of Applied Ecology, 49(1), 90–98. Retrieved from http://doi.wiley.com/10.1111/j.1365-2664.2011.02073.x
  40. Shan, S., & Sheng, J. (2012). Examination of circulation, flushing time and dispersion in Halifax Harbour of Nova Scotia. Water Quality Research Journal of Canada, 47(3-4), 353. Retrieved from http://www.iwaponline.com/wqrjc/047/wqrjc0470353.htm
  41. Thomson, R. E., Beamish, R. J., Beacham, T. D., Trudel, M., Whitfield, P. H., & Hourston, R. A. S. (2012). Anomalous Ocean Conditions May Explain the Recent Extreme Variability in Fraser River Sockeye Salmon Production. Marine and Coastal Fisheries, 4(1), 415–437. Retrieved from http://dx.doi.org/10.1080/19425120.2012.675985
  42. Thorstad, E. B., Whoriskey, F. G., Uglem, I., Moore, A., Rikardsen, A. H., & Finstad, B. (2012). A critical life stage of the Atlantic salmon Salmo salar: behaviour and survival during the smolt and initial post-smolt migration. Journal of Fish Biology, 81(2), 500–42. Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/22803722
  43. Urrego-Blanco, J., & Sheng, J. (2012). Interannual Variability of the Circulation over the Eastern Canadian Shelf. Atmosphere-Ocean, 50(3), 277–300. Retrieved from http://dx.doi.org/10.1080/07055900.2012.680430
  44. Winship, A. J., Jorgensen, S. J., Shaffer, S. A., Jonsen, I. D., Robinson, P. W., Costa, D. P., & Block, B. A. (2012). State-space framework for estimating measurement error from double-tagging telemetry experiments. Methods in Ecology and Evolution, 3(2), 291–302. Retrieved from http://doi.wiley.com/10.1111/j.2041-210X.2011.00161.x
  45. Wirgin, I., Maceda, L., Waldman, J. R., Wehrell, S., Dadswell, M. J., & King, T. (2012). Stock Origin of Migratory Atlantic Sturgeon in Minas Basin, Inner Bay of Fundy, Canada, Determined by Microsatellite and Mitochondrial DNA Analyses. Transactions of the American Fisheries Society, 141(5), 1389–1398. Retrieved from http://dx.doi.org/10.1080/00028487.2012.700899

2011 Peer-Reviewed Scientific Journal Articles – Published

  1. Barnett, A., Abrantes, K. G., Stevens, J. D., & Semmens, J. M. (2011) Site fidelity and sex-specific migration in a mobile apex predator: implications for conservation and ecosystem dynamics. Animal Behaviour, 81(5): 1039-1048. doi.org/10.1016/j.anbehav.2011.02.011
  2. Clark, T. D., Donaldson, M. R., Drenner, S. M., Hinch, S. G., Patterson, D. A., Hills, J. A., … Farrell, A. P. (2011). The efficacy of field techniques for obtaining and storing blood samples from fishes. Journal of Fish Biology, 79(5), 1322–1333.
  3. Clark, T. D., Jeffries, K. M., Hinch, S. G., & Farrell, A. P. (2011). Exceptional aerobic scope and cardiovascular performance of pink salmon (Oncorhynchus gorbuscha) may underlie resilience in a warming climate. The Journal of Experimental Biology, 214, 3071–3081.
  4. Cooke, S. J., Iverson, S. J., Stokesbury, M. J. W., Hinch, S. G., Fisk, A. T., VanderZwaag, D. L., … Whoriskey, F. G. (2011). Ocean Tracking Network Canada: A Network Approach to Addressing Critical Issues in Fisheries and Resource Management with Implications for Ocean Governance. Fisheries, 36(12), 583–592. Retrieved from http://dx.doi.org/10.1080/03632415.2011.633464
  5. Cooke, S. J., Wagner, G. N., Brown, R. S., & Deters, K. A. (2011). Training considerations for the intracoelomic implantation of electronic tags in fish with a summary of common surgical errors. Reviews in Fish Biology and Fisheries, 21, 11–24.
  6. Cooke, S. J., Woodley, C., Eppard, M. B., Brown, R. S., & Nielsen, J. L. (2011). Advancing the surgical implantation of electronic tags in fish: a gap analysis and research agenda based on a review of trends in intracoelomic tagging effects studies. Reviews in Fish Biology and Fisheries, 21, 127–151.
  7. Donaldson, M. R., Hinch, S. G., Patterson, D. A., Hills, J., Thomas, J. O., Cooke, S. J., … Farrell, A. P. (2011). The consequences of angling and beach seine capture on the physiology, post-release behaviour and survival of adult sockeye salmon during upriver migration. Fisheries Research, 108, 133–141.
  8. Eliason, E. J., Clark, T. D., Hague, M. J., Hanson, L. M., Gallagher, Z. S., Jeffries, K. M., … Farrell, A. P. (2011). Differences in thermal tolerance among sockeye salmon populations. Science, 332, 109–112.
  9. Field, I. C., Meekan, M. G., Speed, C. W., White, W., & Bradshaw, C. J. A. (2011) Quantifying movement patterns for shark conservation at remote coral atolls in the Indian Ocean. Coral Reefs, 30(1), 61–71. http://doi.org/10.1007/s00338-010-0699-x
  10. Hasler, C. T., Christie, G. C., Imhof, J., Power, M., & Cooke, S. J. (2011). A network approach to addressing strategic fisheries, aquaculture and aquatic sciences issues at a national scale: an introduction to a series of case studies from Canada. Fisheries, 36, 450–453.
  11. Knip, D. M., Heupel, M. R., Simpfendorfer, C. A., Tobin, A. J., & Moloney, J. (2011) Wet-season effects on the distribution of juvenile pigeye sharks, Carcharhinus amboinensis, in tropical nearshore waters. Marine and Freshwater Research, 62(6): 658-667. dx.doi.org/10.1071/MF10136
  12. Knip, D., Heupel, M., Simpfendorfer, C., Tobin, A., & Moloney, J. (2011) Ontogenetic shifts in movement and habitat use of juvenile pigeye sharks Carcharhinus amboinensis in a tropical nearshore region. Marine Ecology Progress Series, 425: 233–246. doi.org/10.3354/meps09006
  13. Martins, E. G., Hinch, S. G., Patterson, D. A., Hague, M. J., Cooke, S. J., Miller, K. M., … Farrell, A. P. (2011). Effects of river temperature and climate warming on stock-specific survival of adult migrating Fraser River sockeye salmon (Oncorhynchus nerka). Global Change Biology, 17, 99–114.
  14. Miller, K. M., Li, S., Kaukinen, K. H., Ginther, N., Hammill, E., Curtis, J. M. R., … Farrell, A. P. (2011). Genomic signatures predict migration and spawning failure in wild Canadian salmon. Science, 331, 214–217.
  15. Munroe, S., Avery, T. S., Shutler, D., & Dadswell, M. J. (2011). Spatial attachment site preferences of macroparasites on Atlantic sturgeon, Acipenser oxyrinchus, in Minas Basin, Bay of Fundy, Canada. Journal of Parasitology, 97, 377–383.
  16. Murchie, K. J., Cooke, S. J., Danylchuk, A. J., Danylchuk, S. E., Goldberg, T. L., Suski, C. D., & Philipp, D. P. (2011). Thermal biology of bonefish (Albula vulpes) in Bahamian coastal waters and tidal creeks: An integrated laboratory and field study. Journal of Thermal Biology, 36(1), 38–48. http://doi.org/10.1016/j.jtherbio.2010.10.005
  17. Murchie, K. J., Cooke, S. J., Danylchuk, A. J., & Suski, C. D. (2011). Estimates of field activity and metabolic rates of bonefish (Albula vulpes) in coastal marine habitats using acoustic tri-axial accelerometer transmitters and intermittent-flow respirometry. Journal of Experimental Marine Biology and Ecology, 396(2), 147–155. http://doi.org/10.1016/j.jembe.2010.10.019
  18. Nielsen, J. K., Niezgoda, G. H., Taggart, S. J., Cooke, S. J., Anson, P., Hasler, C. T., … Carl, G. (2011). Mobile positioning of tagged aquatic animals using acoustic telemetry with a synthetic hydrophone array (SYNAPS: Synthetic Aperture Positioning System). American Fisheries Society Symposium, 76, 1–18. Retrieved from http://store.afsbooks.org/proofs/tag/nielsen.pdf
  19. O’Toole, A., Danylchuk, A., Goldberg, T., Suski, C., Philipp, D., Brooks, E., & Cooke, S. (2011). Spatial ecology and residency patterns of adult great barracuda (Sphyraena barracuda) in coastal waters of The Bahamas. Marine Biology, 158(10), 2227–2237. http://doi.org/10.1007/s00227-011-1728-1
  20. Payne, N.L., Gillanders, B.M., & Semmens, J.M. (2011) Breeding durations as estimators of adult sex ratios and population size. Oecologia 165 (2), 341-347.
  21. Payne, N.L., Gillanders, B.M., Seymour, R.S., Webber, D.M., Snelling, E.P., & Semmens, J.M. (2011) Accelerometry estimates field metabolic rate in giant Australian cuttlefish Sepia apama during breeding. Journal of Animal Ecology 80 (2), 422-430.
  22. Reddin, D. G., Dowton, P., Fleming, I. A., Hansen, L. P., & Mahon, A. (2011). Behavioural ecology at sea of Atlantic salmon (Salmo salar) kelts from a Newfoundland (Canada) river. Fisheries Oceanography, 20(174-191).
  23. Shan, S., Sheng, J., Thompson, K. R., & Greenberg, D. (2011). Simulating three-dimensional circulation and hydrography of Halifax Harbour using a multi-grid coastal circulation model. Ocean Dynamics, 61, 951–976.
  24. Thomson, R. E., & Hourston, R. A. S. (2011). A matter of timing: The role of the ocean in the initiation of spawning migration by Late-run Fraser River sockeye salmon (Oncorhychus nerka). Fisheries Oceanography, 20(1), 47–65.
  25. VanderZwaag, D. L., Engler Palma, M. C., & Hutchings, J. A. (2011). Canada’s Species at Risk Act and Atlantic Salmon: Cascade of Promises, Trickles of Protection, Sea of Challenges. Journal of Environmental Law and Practice, 22(3), J.E.L.P. 267. Retrieved from http://ssrn.com/abstract=2126177

2010 Peer-Reviewed Scientific Journal Articles – Published

  1. Barnett, A., Abrantes, K., Stevens, J. D., Bruce, B. D., & Semmens, M. (2010) Fine-scale movements of the broadnose sevengill shark, and its main prey, the gummy shark. PLoS ONE, 5(12): e15464. doi:10.1371/journal.pone.0015464
  2. Barnett, A., Abrantes, K., Stevens, J. D., Yick, J. L., Frusher, S. D., & Semmens, M. (2010) Inferring predator-prey relationships and foraging ecology of a marine apex predator with a wide temperate distribution. Marine Ecology Progress Series, 416: 189–200.
  3. Barnett, A., Stevens, J. D., Frusher, S. D., & Semmens, M. (2010) Seasonal occurrence and population structure of the broadnose sevengill shark (Notorynchus cepedianus) in coastal habitats of southeast Tasmania. Journal of Fish Biology, 77: 1688–1701.
  4. Clark, T. D., Sandblom, E., Hinch, S. G., Patterson, D. A., Frappell, P. B., & Farrell, A. P. (2010). Simultaneous biologging of heart rate and acceleration, and their relationships with energy expenditure in free-swimming sockeye salmon (Oncorhynchus nerka). Journal of Comparative Physiology B – Biochemical, Systemic, and Environmental Physiology, 180, 673–684.
  5. Fennel, K. (2010). The role of continental shelves in nitrogen and carbon cycling: Northwestern North Atlantic case study. Ocean Science, 6(2), 539–548. Retrieved from http://www.ocean-sci.net/6/539/2010/
  6. Fujioka K, Hobday AJ, Kawabe R, Miyashita K, Honda K, Itoh T, & Takao Y. (2010) Interannual variation in summer habitat utilization by juvenile southern blue fin tuna (Thunnus maccoyi) in southern Western Australia. Ocean. 19(3): 183-195.
  7. Fujioka, K., Kawabe, R., Hobday, A. J., Takao, Y., Miyashita, K., Sakai, O., & Itoh, T. (2010) Spatial and temporal variation in the distribution of juvenile southern blue fin tuna Thunnus maccoyi: implication for precise estimation of recruitment abundance indices. Fish Sci 76: 403-410.
  8. Honda, K., Hobday, A. J., Kawabe, R., Tojo, N., Fujioka, K., Takao, Y., & Miyashita, K. (2010) Age-dependent distribution of juvenile southern blue fin tuna (Thunnus maccoyi) on the continental shelf off southwest Australia determined by acoustic monitoring. Ocean. 19 (2): 151-158.
  9. Murchie, K., Schwager, E., Cooke, S., Danylchuk, A., Danylchuk, S., Goldberg, T., … Philipp, D. (2010) Spatial ecology of juvenile lemon sharks (Negaprion brevirostris) in tidal creeks and coastal waters of Eleuthera, The Bahamas. Environmental Biology of Fishes, 89(1), 95–104. http://doi.org/10.1007/s10641-010-9693-y
  10. O’Dor R., Dagorn, L., Holland, K., Jonsen, I., Payne, J., Sauer, W., Semmens,, Stokesbury, M., Smith, P., & Whoriskey, F. (2010) The Ocean Tracking Network. In: Hall, J., Harrison, D.E., & Stammer, D. (Eds) Proceedings of OceanObs ’09: Sustained Ocean Observations and Information for Society (Vol. 2), Venice, Italy, 21-25 September 2009. ESA Publication WPP-306
  11. Payne, N.L., Gillanders, B.M., Webber, D.M., & Semmens, J.M. (2010) Interpreting diel activity patterns from acoustic telemetry: the need for controls. Marine Ecology-Progress Series 419, 295-301.
  12. Speed, C., Field, I.C, Meekan, M.G., & Bradshaw, C.J.A. (2010)Complexities of coastal shark movements and their implications for management   Marine Ecology Progress Series 408: 275-293.
  13. Thiem, J. D., Taylor, M. K., McConnachie, S. H., Binder, T. R., & Cooke, S. J. (2010). Trends in the reporting of tagging procedures for fish telemetry studies that have used surgical implantation of transmitters: a call for more complete reporting. Reviews in Fish Biology and Fisheries, 21(1), 117–126. Retrieved from http://link.springer.com/10.1007/s11160-010-9194-2
  14. Wagner, G. N., Cooke, S. J., Brown, R. S., & Deters, K. A. (2010). Surgical implantation techniques for electronic tags in fish. Reviews in Fish Biology and Fisheries, 21(1), 71–81. Retrieved from http://link.springer.com/10.1007/s11160-010-9191-5
  15. Williams, G. D., Hindell, M., Houssais, M.-N.,Tamura, T, & Field I. C. (2010) Upper ocean stratification and sea ice growth rates during the summer-fall transition, as revealed by Elephant seal foraging in the Adélie Depression, East Antarctica. Ocean Sci. Discuss., 7: 1913-1951.

 

Abstracts

Shan, S., and J. Sheng, Simulating three-dimensional circulation and hydrography in Halifax Harbour using a nested-grid ocean circulation model, 44th Annual CMOS Congress, Ottawa, Canada, June, 2010.

Smith, P., Greenan, B., Scotney, M. Oceanographic Constraints on Living Marine Resources: Early Results from the Ocean Tracking Network on the Halifax Line, 44th Annual CMOS Congress, Ottawa, June, 2010

Urrego-Blanco, J., and J. Sheng, Assessing the performance of a northwest Atlantic Ocean circulation model using the spectral nudging and the semi-prognostic methods, 44th Annual CMOS Congress, Ottawa, Canada, June, 2010.

 

Presentations

Collins, A. (OTN graduate student). Effects of acoustic tags on juvenile sockeye salmon. March 19, 2010. Fisheries Centre Seminar Series, UBC, Vancouver, BC. Invited Seminar.

Hinch, S.G., S. J. Cooke, A.P. Farrell, D.A. Patterson Linking telemetry, physiology, and experimental biology: novel approaches for use in studying salmonid migrations and managing fisheries. International Association of Great Lakes Research, May 17-20, 2010, Invited Conference Presentation.

Hinch, S.G. Adult sockeye salmon: challenges to complete the journey and spawn. Summit on Fraser River sockeye salmon. Understanding stock declines and prospects for the future—Simon Fraser University, Continuing Studies in Science, March 30, 2010, Wosk Centre, Vancouver, BC. Invited Conference Presentation.